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    LOC100251366 protein SENSITIVITY TO RED LIGHT REDUCED 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100251366, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC100251366
    Gene description
    protein SENSITIVITY TO RED LIGHT REDUCED 1
    Locus tag
    VIT_00037424001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100251366 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (17036761..17045666)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (13993043..14001951)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene CBL-interacting protein kinase 18 Neighboring gene uncharacterized LOC104879690 Neighboring gene vacuolar protein sorting-associated protein 26B Neighboring gene oligoribonuclease

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in microtubule-based process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SENSITIVITY TO RED LIGHT REDUCED 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      17036761..17045666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059737579.1 → XP_059593562.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      UniProtKB/TrEMBL
      A5B9I4

    2. XM_010653293.3 → XP_010651595.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      See identical proteins and their annotated locations for XP_010651595.1

      UniProtKB/TrEMBL
      A5B9I4
      Conserved Domains (1) summary
      PLN03093
      Location:6 → 269
      PLN03093; Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

    3. XM_010653292.3 → XP_010651594.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      See identical proteins and their annotated locations for XP_010651594.1

      UniProtKB/TrEMBL
      A5B9I4
      Conserved Domains (1) summary
      PLN03093
      Location:6 → 269
      PLN03093; Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

    4. XM_002271561.5 → XP_002271597.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      See identical proteins and their annotated locations for XP_002271597.1

      UniProtKB/TrEMBL
      A5B9I4
      Conserved Domains (1) summary
      PLN03093
      Location:6 → 269
      PLN03093; Protein SENSITIVITY TO RED LIGHT REDUCED 1; Provisional

    5. XM_059737580.1 → XP_059593563.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      UniProtKB/TrEMBL
      A5B9I4

    6. XM_059737581.1 → XP_059593564.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      UniProtKB/TrEMBL
      A5B9I4

    7. XM_019220757.2 → XP_019076302.1  protein SENSITIVITY TO RED LIGHT REDUCED 1

      UniProtKB/TrEMBL
      A5B9I4
    Nucleotide Protein
    Heading Accession and Version

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