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    LOC100244378 transcription termination factor MTERF2, chloroplastic [ Vitis vinifera (wine grape) ]

    Gene ID: 100244378, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100244378
    Gene description
    transcription termination factor MTERF2, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100244378 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 9 NC_081813.1 (23202827..23208488, complement)
    102 previous assembly 12X (GCF_000003745.3) 9 NC_012015.3 (21891854..21897504, complement)

    Chromosome 9 - NC_081813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100249538 Neighboring gene mitochondrial import receptor subunit TOM7-2 Neighboring gene uncharacterized LOC100263288 Neighboring gene uncharacterized LOC104880413 Neighboring gene U-box domain-containing protein 35

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription termination factor MTERF2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081813.1 Reference ASM3070453v1 Primary Assembly

      Range
      23202827..23208488 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002267799.4 → XP_002267835.1  transcription termination factor MTERF2, chloroplastic

      UniProtKB/TrEMBL
      F6GYK9
      Conserved Domains (1) summary
      pfam02536
      Location:267 → 574
      mTERF; mTERF
    Nucleotide Protein
    Heading Accession and Version

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