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    LOC100242617 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100242617, updated on 23-Oct-2023

    Summary

    Gene symbol
    LOC100242617
    Gene description
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
    Locus tag
    VIT_00036166001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

    See LOC100242617 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (22909492..22927449, complement)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (19898335..19916299, complement)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g27610 Neighboring gene subtilisin-like serine-protease S Neighboring gene aluminum-activated malate transporter 2 Neighboring gene uncharacterized LOC109122763

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in vacuole organization IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
    Names
    vacuolar protein sorting-associated protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      22909492..22927449 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002262726.5XP_002262762.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2

      UniProtKB/TrEMBL
      F6HHH1
      Conserved Domains (4) summary
      cd02678
      Location:478
      MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
      pfam09336
      Location:366430
      Vps4_C; Vps4 C terminal oligomerization domain
      pfam17862
      Location:321356
      AAA_lid_3; AAA+ lid domain
      cd19521
      Location:124294
      RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4
    2. XM_059737651.1XP_059593634.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1