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    LOC100241887 chlorophyll a-b binding protein CP24 10A, chloroplastic-like [ Vitis vinifera (wine grape) ]

    Gene ID: 100241887, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100241887
    Gene description
    chlorophyll a-b binding protein CP24 10A, chloroplastic-like
    Locus tag
    VIT_00029789001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100241887 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (15216438..15217760)
    102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (14705472..14706742, complement)

    Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C BIPP2C1 Neighboring gene uncharacterized LOC104880973 Neighboring gene uncharacterized LOC100264168 Neighboring gene uncharacterized LOC109123449

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
    2. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    3. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    4. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein CP24 10A, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

      Range
      15216438..15217760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002263165.5 → XP_002263201.1  chlorophyll a-b binding protein CP24 10A, chloroplastic

      See identical proteins and their annotated locations for XP_002263201.1

      UniProtKB/TrEMBL
      A0A438GRS3, A5ASW8
      Conserved Domains (1) summary
      PLN00170
      Location:1 → 257
      PLN00170; photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
    Nucleotide Protein
    Heading Accession and Version

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