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    LOC100179888 KH domain-containing, RNA-binding, signal transduction-associated protein 1 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100179888, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC100179888
    Gene description
    KH domain-containing, RNA-binding, signal transduction-associated protein 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
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    Genomic context

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    See LOC100179888 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 1 NC_020166.2 (8220723..8231148)

    Chromosome 1 - NC_020166.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113474698 Neighboring gene magnesium transporter MRS2 homolog, mitochondrial Neighboring gene uncharacterized LOC113474699 Neighboring gene probable lysosomal cobalamin transporter Neighboring gene dual oxidase 1-like Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene dual oxidase-D

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020166.2 Chromosome 1 Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An integrated database of the ascidian, Ciona intestinalis: towards functional genomics. Satou Y, et al. Zoolog Sci, 2005 Aug. PMID 16141696
    2. A cDNA resource from the basal chordate Ciona intestinalis. Satou Y, et al. Genesis, 2002 Aug. PMID 12203911
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH domain-containing, RNA-binding, signal transduction-associated protein 1
    Names
    KH domain-containing, RNA-binding, signal transduction-associated protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020166.2 Reference KH Primary Assembly

      Range
      8220723..8231148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018815323.2 → XP_018670868.1  KH domain-containing, RNA-binding, signal transduction-associated protein 1

      UniProtKB/TrEMBL
      A0A1W5BEW9

    RNA

    1. XR_001975125.2 RNA Sequence

    2. XR_003396373.1 RNA Sequence

    3. XR_003396372.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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