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    PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Equus caballus (horse) ]

    Gene ID: 100059479, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLOD3provided by VGNC
    Official Full Name
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 3provided by VGNC
    Primary source
    VGNC:VGNC:21587
    See related
    Ensembl:ENSECAG00000021913
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See PLOD3 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (9454925..9462763, complement)

    Chromosome 13 - NC_009156.3Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase 16 (putative) Neighboring gene monoacylglycerol O-acyltransferase 3 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene uncharacterized LOC111776197 Neighboring gene claudin 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009156.3 Chromosome 13 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen glucosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009156.3 Reference EquCab3.0 Primary Assembly

      Range
      9454925..9462763 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005598665.3 → XP_005598722.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

      UniProtKB/TrEMBL
      F7B3H1
      Conserved Domains (1) summary
      smart00702
      Location:610 → 773
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_023655380.1 → XP_023511148.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

      UniProtKB/TrEMBL
      F7B3H1
      Related
      ENSECAP00000019966.3, ENSECAT00000024057.3
      Conserved Domains (1) summary
      smart00702
      Location:588 → 751
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    3. XM_005598666.3 → XP_005598723.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X3

      UniProtKB/TrEMBL
      F7B3H1
      Related
      ENSECAP00000072560.1, ENSECAT00000123789.1
      Conserved Domains (1) summary
      smart00702
      Location:578 → 741
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

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