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    si:dkeyp-115e12.6 si:dkeyp-115e12.6 [ Danio rerio (zebrafish) ]

    Gene ID: 100005596, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkeyp-115e12.6provided by ZNC
    Official Full Name
    si:dkeyp-115e12.6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141210-2
    See related
    Ensembl:ENSDARG00000090986 AllianceGenome:ZFIN:ZDB-GENE-141210-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable microtubule binding activity. Predicted to be located in chromosome, centromeric region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkeyp-115e12.6 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (8638339..8697378)
    105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (8332204..8391264)

    Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene syntaxin 5A Neighboring gene zgc:162144 Neighboring gene serine/threonine-protein kinase pim-3-like Neighboring gene potassium channel, subfamily K, member 4a Neighboring gene uncharacterized LOC137487564

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    centromere protein F
    Names
    centromere protein F-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007125.7 Reference GRCz11 Primary Assembly

      Range
      8638339..8697378
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481112.2 → XP_021336787.1  centromere protein F isoform X1

      UniProtKB/TrEMBL
      A0A8M9PZH7
      Conserved Domains (3) summary
      pfam10481
      Location:1 → 271
      CENP-F_N; Cenp-F N-terminal domain
      pfam10490
      Location:1631 → 1677
      CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
      cl25732
      Location:252 → 986
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_021481113.2 → XP_021336788.1  centromere protein F isoform X2

      UniProtKB/TrEMBL
      A0A0R4IN88, A0A8M9QBB8
      Related
      ENSDARP00000137794.1, ENSDART00000163240.2
      Conserved Domains (3) summary
      pfam10481
      Location:1 → 270
      CENP-F_N; Cenp-F N-terminal domain
      pfam10490
      Location:1630 → 1676
      CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
      cl25732
      Location:251 → 985
      SMC_N; RecF/RecN/SMC N terminal domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394892.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      249..56758
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001344567.9 → XP_001344603.4  centromere protein F isoform X1

      UniProtKB/TrEMBL
      A0A8M1PZT6
      Conserved Domains (4) summary
      pfam10481
      Location:1 → 271
      CENP-F_N; Cenp-F N-terminal domain
      pfam10490
      Location:1632 → 1678
      CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
      cl25732
      Location:252 → 986
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26309
      Location:1061 → 1312
      MscS_TM; Mechanosensitive ion channel inner membrane domain 1

    2. XM_021472747.2 → XP_021328422.1  centromere protein F isoform X2

      UniProtKB/TrEMBL
      A0A8M9PBJ1
      Conserved Domains (4) summary
      pfam10481
      Location:1 → 270
      CENP-F_N; Cenp-F N-terminal domain
      pfam10490
      Location:1631 → 1677
      CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
      cl25732
      Location:251 → 985
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26309
      Location:1060 → 1311
      MscS_TM; Mechanosensitive ion channel inner membrane domain 1
    Nucleotide Protein Strain
    Heading Accession and Version

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