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    si:ch211-132g1.3 si:ch211-132g1.3 [ Danio rerio (zebrafish) ]

    Gene ID: 100004401, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-132g1.3provided by ZNC
    Official Full Name
    si:ch211-132g1.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090312-148
    See related
    AllianceGenome:ZFIN:ZDB-GENE-090312-148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be involved in heterotypic cell-cell adhesion and immune response. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-132g1.3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (1858212..1885630, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (1705941..1737830, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 3 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 5 Neighboring gene carcinoembryonic antigen-related cell adhesion molecule 5 Neighboring gene si:ch211-132g1.4 Neighboring gene si:ch211-132g1.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Single cell sequencing of radial glia progeny reveals the diversity of newborn neurons in the adult zebrafish brain. Lange C, et al. Development, 2020 Jan 9. PMID 31908317, Free PMC Article
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-132g1.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      1858212..1885630 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021475925.2 → XP_021331600.1  uncharacterized protein si:ch211-132g1.3

      UniProtKB/TrEMBL
      A0A8M9Q7X9, A0A8M9QDC4
      Conserved Domains (1) summary
      cl11960
      Location:29 → 121
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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