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PhysalisDB

Introduction

Physalis peruviana commonly known as Cape gooseberry is a member of the Solanaceae family that has an increasing popularity due to its nutritional and medicinal values. A broad range of genomic tools is available for other Solanaceae, including tomato and potato. However, limited genomic resources are currently available for Cape gooseberry.

Physalis peruviana
We present the first comprehensive analysis of the Physalis peruviana leaf, root and stem transcriptomes, which provide valuable resources for development of genetic tools in the species. Assembled transcripts with gene models could serve as potential candidates for marker discovery with a variety of applications including: functional diversity, conservation and improvement to increase productivity and fruit quality. P. peruviana was estimated to be phylogenetically branched out before the divergence of five other Solanaceae family members, S. lycopersicum, S. tuberosum, Capsicum spp, S. melongena and Petunia spp.

BioProject: Physalis peruviana

ID: 67621

Physalis peruviana Colombia variety transcriptome sequencing project


Sequence data
Nucleotide (total) 33874
TSA 1
Transcripts 33873
SRA Experiments 11
Publications
PubMed 2
PMC 2
Other datasets
BioSample 10

Papers

  1. Vera Alvarez R., Medeiros Vidal N, et al. Workflow and web application for annotating NCBI BioProject transcriptome data. Database, Volume 2017, 1 January 2017, bax008
  2. Enciso-Rodríguez FE, González C, Rodríguez EA, et al. Identification of Immunity Related Genes to Study the Physalis peruviana – Fusarium oxysporum Pathosystem. Jordan IK, ed. PLoS ONE. 2013;8(7):e68500. doi:10.1371/journal.pone.0068500.
  3. Garzón-Martínez GA, Zhu ZI, Landsman D, Barrero LS, Mariño-Ramírez L. The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. BMC Genomics. 2012;13:151. doi:10.1186/1471-2164-13-151.
  4. Simbaqueba J, Sánchez P, Sanchez E, et al. Development and Characterization of Microsatellite Markers for the Cape Gooseberry Physalis peruviana. Jordan IK, ed. PLoS ONE. 2011;6(10):e26719. doi:10.1371/journal.pone.0026719.