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Links from Protein

Items: 1 to 20 of 21

1.

Sigma-54 interaction domain

GO Terms:
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
regulation of DNA-templated transcription (GO:0006355)
Molecular Function:
transcription factor binding (GO:0008134)
Date:
2024-08-14

Family Accession:
NF025885.5
Method:
HMM

2.

AAA family ATPase

This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. [1]. 7646486. A 200-amino acid ATPase module in search of a basic function. Confalonieri F, Duguet M;. Bioessays 1995;17:639-650. A large extension of the family. [2]. 9927482. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Neuwald AF, Aravind L, Spouge JL, Koonin EV;. Genome Res 1999;9:27-43. (from Pfam)

GO Terms:
Molecular Function:
ATP binding (GO:0005524)
Molecular Function:
ATP hydrolysis activity (GO:0016887)
Date:
2024-10-16

Family Accession:
NF019344.5
Method:
HMM

3.

AAA family ATPase

This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. [1]. 7646486. A 200-amino acid ATPase module in search of a basic function. Confalonieri F, Duguet M;. Bioessays 1995;17:639-650. A large extension of the family. [2]. 9927482. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Neuwald AF, Aravind L, Spouge JL, Koonin EV;. Genome Res 1999;9:27-43. (from Pfam)

GO Terms:
Molecular Function:
ATP binding (GO:0005524)
Molecular Function:
ATP hydrolysis activity (GO:0016887)
Date:
2024-10-16

Family Accession:
NF019348.5
Method:
HMM

4.

helix-turn-helix domain-containing protein

GO Terms:
Molecular Function:
sequence-specific DNA binding (GO:0043565)
Date:
2024-08-14

Family Accession:
NF014950.5
Method:
HMM

5.

sigma 54-interacting transcriptional regulator

GO Terms:
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
regulation of DNA-templated transcription (GO:0006355)
Molecular Function:
transcription factor binding (GO:0008134)
Date:
2024-08-14

Family Accession:
NF012385.5
Method:
HMM

6.

response regulator

This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. [1]. 7699720. Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution. Pao GM, Saier MH;. J Mol Evol 1995;40:136-154. (from Pfam)

GO Terms:
Biological Process:
phosphorelay signal transduction system (GO:0000160)
Date:
2024-10-16

Family Accession:
NF012301.5
Method:
HMM

7.
new record, indexing in progress
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8.
new record, indexing in progress
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9.
new record, indexing in progress
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10.
new record, indexing in progress
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11.
new record, indexing in progress
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12.
new record, indexing in progress
Family Accession:
13.
new record, indexing in progress
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14.
new record, indexing in progress
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15.
new record, indexing in progress
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16.
new record, indexing in progress
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17.
new record, indexing in progress
Family Accession:
18.

nitrogen regulation protein NR(I)

Gene:
glnG
GO Terms:
Biological Process:
regulation of DNA-templated transcription (GO:0006355)
Molecular Function:
sequence-specific DNA binding (GO:0043565)
Date:
2022-04-22

Family Accession:
NF008176.1
Method:
HMM

19.

nitrogen regulation protein NR(I)

This HMM represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

Gene:
ntrC
GO Terms:
Molecular Function:
phosphorelay response regulator activity (GO:0000156)
Biological Process:
phosphorelay signal transduction system (GO:0000160)
Molecular Function:
DNA binding (GO:0003677)
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
regulation of nitrogen utilization (GO:0006808)
Date:
2024-05-30

Family Accession:
TIGR01818.1
Method:
HMM

20.

sigma-54-dependent Fis family transcriptional regulator

sigma-54-dependent Fis family transcriptional regulator containing a REC domain, similar to Escherichia coli transcriptional regulators AtoC and NR(I), which function in the regulation of genes involved in acetoacetate metabolism and nitrogen assimilation, respectively

Date:
2017-03-21

Family Accession:
11485099
Method:
Sparcle

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