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Items: 6

1.

Pus10, C-terminal

This is the C-terminal catalytic domain of tRNA pseudouridine synthase Pus10, conserved in archaea and eukaryotes [1-5]. In archaea it catalyses the formation of the pseudouridine at positions 54 and 55 in tRNA, while human Pus10 has different functions depending on its subcellular location: it is involved in miRNA processing in the nucleus and acts as a tRNA pseudouridylate synthase in the cytoplasm [6,7]. Paper describing PDB structure 2apo. [1]. 16286935. The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Hamma T, Reichow SL, Varani G, Ferre-D'Amare AR;. Nat Struct Mol Biol. 2005;12:1101-1107. Paper describing PDB structure 2aus. [2]. 16456033. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Manival X, Charron C, Fourmann JB, Godard F, Charpentier B, Branlant C;. Nucleic Acids Res. 2006;34:826-839. Paper describing PDB structure 2ey4. [3]. 16427014. Crystal structure of a Cbf5-Nop10-Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Rashid R, Liang B, Baker DL, Youssef OA, He Y, Phipps K, Terns RM, Terns MP, Li H;. Mol Cell. 2006;21:249-260. Paper describing PDB structure 2hvy. [4]. 16943774. Crystal structure of an H/ACA box ribonucleoprotein particle. Li L, Ye K;. Nature. 2006;443:302-307. Paper describing PDB structure 2rfk. [5]. 18059286. Substrate RNA positioning in the archaeal H/ACA ribonucleoprotein complex. Liang B, Xue S, Terns RM, Terns MP, Li H;. Nat Struct Mol Biol. 2007;14:1189-1195. [6]. 33023933. TRUNCATED at 1650 bytes (from Pfam)

Date:
2024-10-16
Family Accession:
NF044739.2
Method:
HMM
2.

Pus10 THUMP domain, archaeal

This entry represents the THUMP domain found in Pus10 proteins from archaea. Pus10 is a tRNA pseudouridine synthase responsible for the synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs [1,2]. [1]. 18952823. Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA. Gurha P, Gupta R;. RNA. 2008;14:2521-2527. [2]. 36833309. Transfer RNA Modification Enzymes with a Thiouridine Synthetase, Methyltransferase and Pseudouridine Synthase (THUMP) Domain and the Nucleosides They Produce in tRNA. Hori H;. Genes (Basel). 2023;14:382. [3]. 29349599. Evolution of Eukaryal and Archaeal Pseudouridine Synthase Pus10. Fitzek E, Joardar A, Gupta R, Geisler M;. J Mol Evol. 2018;86:77-89. (from Pfam)

Date:
2024-10-16
Family Accession:
NF046570.1
Method:
HMM
3.
new record, indexing in progress
Family Accession:
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.

tRNA pseudouridine(54/55) synthase Pus10

Members of this family selected for the seed alignment are archaeal tRNA pseudouridine(54/55) synthases called Pus10. Related proteins are found in eukaryotic genomes.

GO Terms:
Molecular Function:
pseudouridine synthase activity (GO:0009982)
Biological Process:
tRNA pseudouridine synthesis (GO:0031119)
Date:
2021-04-27
Family Accession:
TIGR01213.2
Method:
HMM
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