Protein Family Models for Protein (Select 492241612) - Protein Family Models

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Select item 4271371.

The TyrR protein of Haemophilus influenzae is a 36-kD transcription factor whose major function is to control the expression of genes important in the biosynthesis and transport of aromatic amino acids [1]. This entry represents the C-terminal helix-turn-helix DNA-binding domain of TyrR and related proteins. [1]. 11344327. Solution structure of the DNA-binding domain of the TyrR protein of Haemophilus influenzae. Wang Y, Zhao S, Somerville RL, Jardetzky O;. Protein Sci. 2001;10:592-598. (from Pfam)

GO Terms:

Molecular Function:: DNA binding (GO:0003677)

Date:: 2024-10-16

Family Accession:: NF036547.5
Method:: HMM

Select item 4244402.

Sigma-54 interaction domain

GO Terms:

Molecular Function:: ATP binding (GO:0005524)

Biological Process:: regulation of DNA-templated transcription (GO:0006355)

Molecular Function:: transcription factor binding (GO:0008134)

Date:: 2024-08-14

Family Accession:: NF025885.5
Method:: HMM

Select item 4169353.

AAA family ATPase

This Pfam entry includes some of the AAA proteins not detected by the Pfam:PF00004 model. [1]. 7646486. A 200-amino acid ATPase module in search of a basic function. Confalonieri F, Duguet M;. Bioessays 1995;17:639-650. A large extension of the family. [2]. 9927482. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Neuwald AF, Aravind L, Spouge JL, Koonin EV;. Genome Res 1999;9:27-43. (from Pfam)

GO Terms:

Molecular Function:: ATP binding (GO:0005524)

Molecular Function:: ATP hydrolysis activity (GO:0016887)

Date:: 2024-10-16

Family Accession:: NF019348.5
Method:: HMM

Select item 4128934.

helix-turn-helix domain-containing protein

GO Terms:

Molecular Function:: sequence-specific DNA binding (GO:0043565)

Date:: 2024-08-14

Family Accession:: NF014950.5
Method:: HMM

Select item 4118795.

sigma 54-interacting transcriptional regulator

GO Terms:

Molecular Function:: ATP binding (GO:0005524)

Biological Process:: regulation of DNA-templated transcription (GO:0006355)

Molecular Function:: transcription factor binding (GO:0008134)

Date:: 2024-08-14

Family Accession:: NF012385.5
Method:: HMM

Select item 4116216.

AAA family ATPase

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. [1]. 7646486. A 200-amino acid ATPase module in search of a basic function. Confalonieri F, Duguet M;. Bioessays 1995;17:639-650. A large extension of the family. [2]. 9927482. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Neuwald AF, Aravind L, Spouge JL, Koonin EV;. Genome Res 1999;9:27-43. (from Pfam)

GO Terms:

Molecular Function:: ATP binding (GO:0005524)

Molecular Function:: ATP hydrolysis activity (GO:0016887)

Date:: 2024-10-16

Family Accession:: NF012234.5
Method:: HMM

Select item 4109177.

response regulator

This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain. [1]. 7699720. Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution. Pao GM, Saier MH;. J Mol Evol 1995;40:136-154. (from Pfam)

GO Terms:

Biological Process:: phosphorelay signal transduction system (GO:0000160)

Date:: 2024-10-16

Family Accession:: NF012301.5
Method:: HMM

Select item 4037128.