Protein Family Models for Protein (Select 490419157) - Protein Family Models

Select item 4257851.

This domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1]. [1]. 23636399. Structures of the human and Drosophila 80S ribosome. Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R;. Nature. 2013;497:80-85. (from Pfam)

Date:: 2024-10-16

Family Accession:: NF025845.5
Method:: HMM

Select item 4151332.

Elongation factor G, domain IV

This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. (from Pfam)

GO Terms:

Molecular Function:: translation elongation factor activity (GO:0003746)

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-08-14

Family Accession:: NF015706.5
Method:: HMM

Select item 4122033.

GTPase

This HMM identifies the P-loop-containing domain of large numbers of GTPases with ribosome-associated functions, including many involved in ribosome maturation (Der, Era, etc), ribosome rescue (HflX), and protein translation (InfB, Tuf, PrfC).

GO Terms:

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-10-16

Family Accession:: NF014036.5
Method:: HMM

Select item 4110744.

GTP-binding protein

This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Cryoelectron microscopy structure. [1]. 9311785. Visualization of elongation factor Tu on the Escherichia coli ribosome. Stark H, Rodnina MV, Rinke-Appel J, Brimacombe R, Wintermeyer W, van Heel M;. Nature 1997;389:403-406. (from Pfam)

GO Terms:

Molecular Function:: GTPase activity (GO:0003924)

Molecular Function:: GTP binding (GO:0005525)

Date:: 2024-10-16

Family Accession:: NF012239.5
Method:: HMM

Select item 4108475.

Elongation factor G C-terminus

This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF012882.5
Method:: HMM

Select item 4010856.

new record, indexing in progress

Family Accession:

Select item 3916857.

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Family Accession:

Select item 3896928.

new record, indexing in progress

Family Accession:

Select item 3886029.

new record, indexing in progress

Family Accession:

Select item 38821710.

new record, indexing in progress

Family Accession:

Select item 35894111.

new record, indexing in progress

Family Accession:

Select item 35009012.

new record, indexing in progress

Family Accession:

Select item 34824313.

new record, indexing in progress

Family Accession:

Select item 34816014.

new record, indexing in progress

Family Accession:

Select item 16585615.

tetracycline resistance ribosomal protection protein Tet(Q)

Gene:: tet(Q)

Date:: 2020-10-26

Family Accession:: NF012154.0
Method:: HMM

Select item 16523316.

new record, indexing in progress

Family Accession:

Select item 9759717.

elongation factor G

elongation factor G catalyzes the translocation step of protein synthesis in bacteria and mitochondria

Date:: 2024-04-25

Family Accession:: 11422284
Method:: Sparcle

Select item 3684018.

new record, indexing in progress

Family Accession:

Select item 3622819.

tetracycline resistance ribosomal protection protein

Gene:: tet

GO Terms:

Molecular Function:: GTPase activity (GO:0003924)

Molecular Function:: GTP binding (GO:0005525)

Date:: 2021-08-26

Family Accession:: NF012153.1
Method:: HMM

Select item 1852920.

GTP-binding protein

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

GO Terms:

Molecular Function:: GTP binding (GO:0005525)

Date:: 2022-03-28

Family Accession:: TIGR00231.1
Method:: HMM

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