Protein Family Models

This is a helix-turn-helix domain that probably binds to DNA. (from Pfam)

Date:

2024-08-14

Members of this family contains a DNA-binding helix-turn-helix domain. This family contains many example antitoxins from bacterial toxin-antitoxin systems. These antitoxins are likely to be DNA-binding domains. (from Pfam)

Date:

2024-08-14

This domain is a helix-turn-helix domain that probably binds to DNA. (from Pfam)

Date:

2024-08-14

Gram-positive lactobacilli produce bacteriocins to kill closely-related competitor species [1]. To protect themselves from the bacteriocidal activity of this molecule they co-express an immunity protein (for discussion of this operon see Bacteriocin_IIc Pfam:PF10439). The immunity protein structure is a soluble, cytoplasmic, antiparallel four alpha-helical globular bundle with a fifth, more flexible and more divergent C-terminal helical hair-pin [2]. The C-terminal hair-pin recognises the C-terminus of the producer bacteriocin and this interaction is sufficient to dis-orient the bacteriocin within the membrane and close up the permeabilising pore that on its own the bacteriocin creates [3]. These immunity proteins interact in the same way with other bacteriocins, family Bacteriocin_II, Pfam:PF01721. Since many enterococci can produce more than one bacteriocin it seems likely that the whole operon can be carried on transferable plasmids [4]. [1]. 15753083. 1.6-Angstroms crystal structure of EntA-im. A bacterial immunity protein conferring immunity to the antimicrobial activity of the pediocin-like bacteriocin enterocin A. Johnsen L, Dalhus B, Leiros I, Nissen-Meyer J;. J Biol Chem. 2005;280:19045-19050. [2]. 12427956. Comparative studies of immunity proteins of pediocin-like bacteriocins. Fimland G, Eijsink VG, Nissen-Meyer J;. Microbiology. 2002;148:3661-3670. [3]. 17586105. Molecular dynamics simulation study of interaction between a class IIa bacteriocin and its immunity protein. Soliman W, Bhattacharjee S, Kaur K;. Biochim Biophys Acta. 2007;1774:1002-1013. [4]. 15611086. The C-terminal domain of pediocin-like antimicro. TRUNCATED at 1650 bytes (from Pfam)

Date:

2024-10-16

This large family of DNA binding helix-turn helix proteins includes Cro Swiss:P03036 and CI Swiss:P03034. Within the protein Swiss:Q5F9C2, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family [1]. [1]. 20196080. The crystal structure of NGO0477 from Neisseria gonorrhoeae reveals a novel protein fold incorporating a helix-turn-helix motif. Ren J, Sainsbury S, Nettleship JE, Saunders NJ, Owens RJ;. Proteins. 2010;78:1798-1802. (from Pfam)

Date:

2024-10-16

HTH_XRE and EntA_Immun domain-containing protein

Date:

2017-03-02