Protein Family Models for Protein (Select 2672929223) - Protein Family Models

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Items: 5

Select item 4314721.

DUF6596 domain-containing protein

This presumed domain is found at the C-terminus of bacterial RNA polymerase ECF sigma factor proteins. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF042530.3
Method:: HMM

Select item 4146252.

sigma factor

This HMM hits a core region shared by multiple sigma factors, interchangeable subunits that complete the RNA polymerase holoenzyme and allow transcription to start. In E. coli K-12 alone, this HMM hits RpoD (sigma-70), RpoH (sigma-32), FliA (sigma-28), FecI (sigma-19), RpoS, and RpoE.

GO Terms:

Molecular Function:: DNA-binding transcription factor activity (GO:0003700)

Biological Process:: DNA-templated transcription initiation (GO:0006352)

Biological Process:: regulation of DNA-templated transcription (GO:0006355)

Date:: 2024-10-16

Family Accession:: NF016430.5
Method:: HMM

Select item 4062403.

new record, indexing in progress

Family Accession:

Select item 3914794.

new record, indexing in progress

Family Accession:

Select item 2298565.

RNA polymerase sigma factor

RNA polymerase sigma factor; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; contains a DUF6596 domain