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Items: 7

1.

PKD domain-containing protein

This entry represents the PKD domain of Dyslexia-associated protein KIAA0319-like protein, in which it is found in four copies. This entry also includes Kunitz-type protease inhibitor 1 and LRP11 from human. Paper describing PDB structure 2c26. [1]. 16314409. Xyloglucan is recognized by carbohydrate-binding modules that interact with beta-glucan chains. Najmudin S, Guerreiro CI, Carvalho AL, Prates JA, Correia MA, Alves VD, Ferreira LM, Romao MJ, Gilbert HJ, Bolam DN, Fontes CM;. J Biol Chem. 2006;281:8815-8828. Paper describing PDB structure 2y3u. [2]. 21947205. Structure of collagenase G reveals a chew-and-digest mechanism of bacterial collagenolysis. Eckhard U, Schonauer E, Nuss D, Brandstetter H;. Nat Struct Mol Biol. 2011;18:1109-1114. Paper describing PDB structure 2yhg. [3]. 21905122. Ab initio phasing of a nucleoside hydrolase-related hypothetical protein from Saccharophagus degradans that is associated with carbohydrate metabolism. Hehemann JH, Marsters C, Boraston AB;. Proteins. 2011;79:2992-2998. Paper describing PDB structure 2z4t. [4]. 17962295. Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition. Kakuta Y, Okino N, Kajiwara H, Ichikawa M, Takakura Y, Ito M, Yamamoto T;. Glycobiology. 2008;18:66-73. Paper describing PDB structure 4aqo. [5]. 23703618. Structural basis for activity regulation and substrate preference of clostridial collagenases G, H, and T. Eckhard U, Schonauer E, Brandstetter H;. J Biol Chem. 2013;288:20184-20194. (from Pfam)

Date:
2024-10-21
Family Accession:
NF047160.1
Method:
HMM
2.

PKD domain-containing protein

This entry is composed of PKD domains found in bacterial surface proteins. (from Pfam)

Date:
2024-08-14
Family Accession:
NF040138.4
Method:
HMM
3.

glycoside hydrolase family 19 protein

GO Terms:
Molecular Function:
chitinase activity (GO:0004568)
Biological Process:
chitin catabolic process (GO:0006032)
Biological Process:
cell wall macromolecule catabolic process (GO:0016998)
Date:
2024-08-14
Family Accession:
NF012409.5
Method:
HMM
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
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