Protein Family Models for Protein (Select 2590453618) - Protein Family Models

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Links from Protein

Items: 7

Select item 4318721.

Family in the SLOG superfamily, observed as a standalone domain with little informative genome context, although related families in the SLOG superfamily are predicted to function in diverse conflict contexts [1]. [1]. 26590262. Comparative genomic analyses reveal a vast, novel network of nucleotide-centric systems in biological conflicts, immunity and signaling. Burroughs AM, Zhang D, Schaffer DE, Iyer LM, Aravind L;. Nucleic Acids Res. 2015;43:10633-10654. (from Pfam)

Date:: 2024-10-16

Family Accession:: NF037785.5
Method:: HMM

Select item 4146562.

LOG family protein

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF015597.5
Method:: HMM

Select item 4044533.

new record, indexing in progress

Family Accession:

Select item 3908454.

new record, indexing in progress

Family Accession:

Select item 3658805.

new record, indexing in progress

Family Accession:

Select item 3498476.

new record, indexing in progress

Family Accession:

Select item 224417.

TIGR00730 family Rossman fold protein

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this HMM show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

GO Terms: