LOCUS NP_001322013 1166 aa linear PLN 20-OCT-2022
DEFINITION P-loop containing nucleoside triphosphate hydrolases superfamily
protein [Arabidopsis thaliana].
ACCESSION NP_001322013
VERSION NP_001322013.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_001332481.1
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 1166)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 1166)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 1166)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 1166)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 1166)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to ANM59670.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..1166
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..1166
/product="P-loop containing nucleoside triphosphate
hydrolases superfamily protein"
/calculated_mol_wt=132903
Region <205..369
/region_name="PTZ00121"
/note="MAEBL; Provisional"
/db_xref="CDD:173412"
Region 518..739
/region_name="DEADc_DDX46"
/note="DEAD-box helicase domain of DEAD box protein 46;
cd17953"
/db_xref="CDD:350711"
Site order(531,549,551..553,556,574..580,686..687)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350711"
Region 750..880
/region_name="SF2_C_DEAD"
/note="C-terminal helicase domain of the DEAD box
helicases; cd18787"
/db_xref="CDD:350174"
Site order(839,841,866,869..870)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350174"
Region 1063..1165
/region_name="KH-I_AtRH42_like"
/note="type I K homology (KH) RNA-binding domain found in
Arabidopsis thaliana DEAD-box ATP-dependent RNA helicase
RH42 and similar proteins; cd22475"
/db_xref="CDD:411903"
CDS 1..1166
/locus_tag="AT1G20920"
/gene_synonym="F9H16.10; F9H16_10; RCF1; regulator of CBF
gene expression 1"
/coded_by="NM_001332481.1:150..3650"
/db_xref="Araport:AT1G20920"
/db_xref="GeneID:838685"
/db_xref="TAIR:AT1G20920"
ORIGIN
1 mevekskyrs edldvveeea dlkksrrdrd rsnerkkdkg sekrrekdrr kkrvkssdse
61 ddydrdddee rekrkekere rrrrdkdrvk rrserrkssd seddveeede rdkrrvneke
121 rghreherdr gkdrkrdrer eerkdkerer ekdrerrere reerekervk ererreredg
181 erdrrereke rgsrrnrere rsrevgnees dddvkrdlkr rrkeggerke kereksvgrs
241 srhedspkrk svedngekke kktreeeled eqkkldeeve krrrrvqewq elkrkkeeae
301 seskgdadgn epkagkawtl egesddeegh peeksetemd vdeetkpend gdakmvdlen
361 etaatvsesg gdgavdeeei dpldafmntm vlpevekfcn gapppavndg tldskmngke
421 sgdrpkkgfn kalgriiqge dsdsdysepk ndddpslded deefmkrvkk tkaeklslvd
481 hskieyepfr knfyievkdi srmtqeevnt yrkelelkvh gkdvprpikf whqtgltski
541 ldtmkklnye kpmpiqtqal piimsgrdci gvaktgsgkt lgfvlpmlrh ikdqppveag
601 dgpiglvmap trelvqqihs dirkfskplg ircvpvyggs gvaqqiselk rgteivvctp
661 grmidilcts sgkitnlrrv tflvmdeadr mfdmgfepqi triiqnirpe rqtvlfsatf
721 prqvetlark vlnkpveiqv ggrsvvnkdi tqlvevrpes drflrllell gewsekgkil
781 vfvqsqekcd alyrdmikss ypclslhggk dqtdrestis dfkndvcnll iatsvaargl
841 dvkelelvvn fdapnhyedy vhrvgrtgra grkgcavtfi seddakyapd lvkalelseq
901 pvpddlkala dgfmvkvkqg ieqahgtgyg gsgfkfneee eevrkaakka qakeygfeed
961 ksdsedendv vrkagggeis qqqatfaqia aiaaaakaaa aapvsapvta nqllangggl
1021 aampgvlpvt vptlpsegag raaamvaamn lqhnlakiqa dampehyeae leindfpqna
1081 rwkvthketl gpisewtgaa ittrgqfypt gripgpgerk lylfiegpse ksvkhakael
1141 krvleditnq amsslpggas grysvl
//