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transmembrane protein, putative (DUF 3339) [Arabidopsis thaliana]

NCBI Reference Sequence: NP_198912.1

Identical Proteins FASTA Graphics 

LOCUS       NP_198912                 68 aa            linear   PLN 20-OCT-2022
DEFINITION  transmembrane protein, putative (DUF 3339) [Arabidopsis thaliana].
ACCESSION   NP_198912
VERSION     NP_198912.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_123461.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 68)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 68)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 68)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 68)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED94619.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..68
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..68
                     /product="transmembrane protein, putative (DUF 3339)"
                     /calculated_mol_wt=7348
     Region          2..67
                     /region_name="DUF3339"
                     /note="Protein of unknown function (DUF3339); pfam11820"
                     /db_xref="CDD:463361"
     CDS             1..68
                     /locus_tag="AT5G40960"
                     /gene_synonym="MEE6.3; MEE6_3"
                     /coded_by="NM_123461.3:252..458"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR209850.1,INSD:DR209843.1,INSD:DR209848.1,
                     INSD:DR373038.1,INSD:DR209844.1,INSD:DR209846.1,
                     INSD:DR209845.1,INSD:DR209847.1,INSD:EH866744.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY085889.1,INSD:BT024518.1"
                     /note="Protein of unknown function (DUF 3339); CONTAINS
                     InterPro DOMAIN/s: Protein of unknown function DUF3339
                     (InterPro:IPR021775); BEST Arabidopsis thaliana protein
                     match is: Protein of unknown function (DUF 3339)
                     (TAIR:AT5G08391.1); Has 1807 Blast hits to 1807 proteins
                     in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
                     Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
                     339 (source: NCBI BLink)."
                     /db_xref="GeneID:834098"
                     /db_xref="TAIR:AT5G40960"
                     /db_xref="Araport:AT5G40960"
ORIGIN      
        1 mhdwaaplia salfaflspg lilqfpgkes pvgfmnmktt vasifvhtvl yglflilflv
       61 vlnvhvya
//
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Protein clusters for NP_198912.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT5G40960 gene (NM_123461.3).

More about the AT5G40960 gene

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