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squamosa promoter binding protein-like 9 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_181749.1

Identical Proteins FASTA Graphics 

LOCUS       NP_181749                375 aa            linear   PLN 20-OCT-2022
DEFINITION  squamosa promoter binding protein-like 9 [Arabidopsis thaliana].
ACCESSION   NP_181749
VERSION     NP_181749.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_129782.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 375)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 375)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 375)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 375)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC10085.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..375
                     /product="squamosa promoter binding protein-like 9"
                     /calculated_mol_wt=40716
     Region          74..148
                     /region_name="SBP"
                     /note="SBP domain; pfam03110"
                     /db_xref="CDD:460809"
     CDS             1..375
                     /gene="SPL9"
                     /locus_tag="AT2G42200"
                     /gene_synonym="AtSPL9; squamosa promoter binding
                     protein-like 9; T24P15.11; T24P15_11"
                     /coded_by="NM_129782.3:433..1560"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR266999.1,INSD:AV532232.1,INSD:AV557527.1,
                     INSD:CB263324.1,INSD:DR266997.1,INSD:DR266996.1,
                     INSD:DR266993.1,INSD:DR266992.1,INSD:DR750739.1,
                     INSD:AV558614.1,INSD:AV557658.1,INSD:DR266998.1,
                     INSD:DR375055.1,INSD:AV534842.1,INSD:AV564109.1,
                     INSD:DR266991.1,INSD:AI999403.1,INSD:AV821557.1,
                     INSD:AV562658.1,INSD:DR266990.1,INSD:DR266995.1,
                     INSD:AV782054.1,INSD:DR266994.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AJ628864.1,INSD:AJ011638.1,INSD:AY150378.1,
                     INSD:AY046007.1"
                     /note="squamosa promoter binding protein-like 9 (SPL9);
                     FUNCTIONS IN: sequence-specific DNA binding transcription
                     factor activity; INVOLVED IN: vegetative to reproductive
                     phase transition of meristem, regulation of leaf
                     formation, leaf development, regulation of transcription;
                     LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures;
                     EXPRESSED DURING: 12 growth stages; CONTAINS InterPro
                     DOMAIN/s: Transcription factor, SBP-box
                     (InterPro:IPR004333); BEST Arabidopsis thaliana protein
                     match is: squamosa promoter binding protein-like 15
                     (TAIR:AT3G57920.1); Has 3664 Blast hits to 3108 proteins
                     in 157 species: Archae - 2; Bacteria - 85; Metazoa - 116;
                     Fungi - 125; Plants - 880; Viruses - 2; Other Eukaryotes -
                     2454 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G42200"
                     /db_xref="GeneID:818820"
                     /db_xref="TAIR:AT2G42200"
ORIGIN      
        1 memgsnsgpg hgpgqaesgg sstesssfsg glmfgqkiyf edggggsgss ssggrsnrrv
       61 rgggsgqsgq iprcqvegcg mdltnakgyy srhrvcgvhs ktpkvtvagi eqrfcqqcsr
      121 fhqlpefdle krscrrrlag hnerrrkpqp aslsvlasry griapslyen gdagmngsfl
      181 gnqeigwpss rtldtrvmrr pvsspswqin pmnvfsqgsv ggggtsfssp eimdtklesy
      241 kgigdsncal sllsnphqph dnnnnnnnnn nnnnntwras sgfgpmtvtm aqpppapsqh
      301 qylnppwvfk dndndmspvl nlgrytepdn cqissgtamg efelsdhhhq srrqymeden
      361 traydssshh tnwsl
//
Feature
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Protein clusters for NP_181749.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the SPL9 gene (NM_129782.3).

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