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zinc finger and BTB domain-containing protein 47 isoform X3 [Rattus norvegicus]

NCBI Reference Sequence: XP_006244228.1

Identical Proteins FASTA Graphics 

LOCUS       XP_006244228             701 aa            linear   ROD 22-FEB-2024
DEFINITION  zinc finger and BTB domain-containing protein 47 isoform X3 [Rattus
            norvegicus].
ACCESSION   XP_006244228
VERSION     XP_006244228.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_006244166.5
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..701
                     /product="zinc finger and BTB domain-containing protein 47
                     isoform X3"
                     /calculated_mol_wt=77380
     Region          1..114
                     /region_name="BTB_POZ_ZBTB47_ZNF651"
                     /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ
                     (poxvirus and zinc finger) domain found in zinc finger and
                     BTB domain-containing protein 47 (ZBTB47); cd18231"
                     /db_xref="CDD:349540"
     Region          <131..188
                     /region_name="TMEM171"
                     /note="Transmembrane protein family 171; pfam15471"
                     /db_xref="CDD:464734"
     Region          <405..479
                     /region_name="PLN03086"
                     /note="PRLI-interacting factor K; Provisional"
                     /db_xref="CDD:178635"
     Region          421..440
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          448..467
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          475..495
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(475,478,491,495)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:275368"
     Region          503..>584
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          505..525
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(505,508,521,525)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:275368"
     Region          533..553
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          <555..638
                     /region_name="SFP1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; COG5189"
                     /db_xref="CDD:227516"
     Region          561..581
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Site            order(561,564,577,581)
                     /site_type="other"
                     /note="Zn binding site [ion binding]"
                     /db_xref="CDD:275368"
     Site            order(566,568,570,572..573,576..577,580,594,596,600..601,
                     604..605,608,622,624,626,628..629,632..633,636)
                     /site_type="other"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]"
                     /db_xref="CDD:275368"
     Region          589..609
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          613..>662
                     /region_name="COG5048"
                     /note="FOG: Zn-finger [General function prediction only]"
                     /db_xref="CDD:227381"
     Region          617..637
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     Region          645..661
                     /region_name="C2H2 Zn finger"
                     /note="C2H2 Zn finger [structural motif]"
                     /db_xref="CDD:275368"
     CDS             1..701
                     /gene="Zbtb47"
                     /coded_by="XM_006244166.5:611..2716"
                     /db_xref="GeneID:316087"
                     /db_xref="RGD:1562434"
ORIGIN      
        1 mgrlneqrlf qpdlcdvdlv lvpqhsvfpa hkgvlaaysq ffhslftqnk qlqrvelsle
       61 alapsglqqi lnfiytskll vnaanvhevl saasllqmad iaascqelld arslapsgpv
      121 alaqpaasca pvppppyycd ikqeadtpgl pkiyaregpd pysvrvedga gaagdvgsaa
      181 agpaqtlfke ekegtpeeae apggslckle sgeglepeld asgtyghqeq sqiivevnln
      241 nqtlhvstgp egkpgpganp atvvlgqedr mqghseeeee eegggsggge eeeeeeeeeg
      301 gsqgeeeeee egpsdreded eedgpseqda esseeervae grqdpagpag cqgsqadppp
      361 hsrmstrsrg qnsrrratpe peeaggrggk rpkasgavaa pqaadglgak vkleekqqhp
      421 cqkcprvfnn rwylekhmnv thsrmqicgq cgkrfllese lqlhrqtdce rniqcmtcgk
      481 afkklwslhe hnkivhgyae kkfsceicek kfhtmahvrk hmvahtkdmp ftcetcgksf
      541 krsmslkvhs lqhsgekpfr cencnerfqy kyqlrshmsi highkqfmcq wcgkdfnmkq
      601 yfdehmktht gekpyiceic gksftsrpnm krhrrthtge kpypcdvcgq rfrfsnmlka
      661 hkekcfrvsh plpgdpaslp athlqptapl fptapprldt n
//
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