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NCBI Reference Sequence: XP_006244228.1
Identical Proteins FASTA Graphics
LOCUS XP_006244228 701 aa linear ROD 22-FEB-2024 DEFINITION zinc finger and BTB domain-containing protein 47 isoform X3 [Rattus norvegicus]. ACCESSION XP_006244228 VERSION XP_006244228.1 DBLINK BioProject: PRJNA1074393 DBSOURCE REFSEQ: accession XM_006244166.5 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086026) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..701 /organism="Rattus norvegicus" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="8" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" Protein 1..701 /product="zinc finger and BTB domain-containing protein 47 isoform X3" /calculated_mol_wt=77380 Region 1..114 /region_name="BTB_POZ_ZBTB47_ZNF651" /note="BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing protein 47 (ZBTB47); cd18231" /db_xref="CDD:349540" Region <131..188 /region_name="TMEM171" /note="Transmembrane protein family 171; pfam15471" /db_xref="CDD:464734" Region <405..479 /region_name="PLN03086" /note="PRLI-interacting factor K; Provisional" /db_xref="CDD:178635" Region 421..440 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 448..467 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 475..495 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(475,478,491,495) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:275368" Region 503..>584 /region_name="COG5048" /note="FOG: Zn-finger [General function prediction only]" /db_xref="CDD:227381" Region 505..525 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(505,508,521,525) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:275368" Region 533..553 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region <555..638 /region_name="SFP1" /note="Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]; COG5189" /db_xref="CDD:227516" Region 561..581 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Site order(561,564,577,581) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:275368" Site order(566,568,570,572..573,576..577,580,594,596,600..601, 604..605,608,622,624,626,628..629,632..633,636) /site_type="other" /note="putative nucleic acid binding site [nucleotide binding]" /db_xref="CDD:275368" Region 589..609 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 613..>662 /region_name="COG5048" /note="FOG: Zn-finger [General function prediction only]" /db_xref="CDD:227381" Region 617..637 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" Region 645..661 /region_name="C2H2 Zn finger" /note="C2H2 Zn finger [structural motif]" /db_xref="CDD:275368" CDS 1..701 /gene="Zbtb47" /coded_by="XM_006244166.5:611..2716" /db_xref="GeneID:316087" /db_xref="RGD:1562434" ORIGIN 1 mgrlneqrlf qpdlcdvdlv lvpqhsvfpa hkgvlaaysq ffhslftqnk qlqrvelsle 61 alapsglqqi lnfiytskll vnaanvhevl saasllqmad iaascqelld arslapsgpv 121 alaqpaasca pvppppyycd ikqeadtpgl pkiyaregpd pysvrvedga gaagdvgsaa 181 agpaqtlfke ekegtpeeae apggslckle sgeglepeld asgtyghqeq sqiivevnln 241 nqtlhvstgp egkpgpganp atvvlgqedr mqghseeeee eegggsggge eeeeeeeeeg 301 gsqgeeeeee egpsdreded eedgpseqda esseeervae grqdpagpag cqgsqadppp 361 hsrmstrsrg qnsrrratpe peeaggrggk rpkasgavaa pqaadglgak vkleekqqhp 421 cqkcprvfnn rwylekhmnv thsrmqicgq cgkrfllese lqlhrqtdce rniqcmtcgk 481 afkklwslhe hnkivhgyae kkfsceicek kfhtmahvrk hmvahtkdmp ftcetcgksf 541 krsmslkvhs lqhsgekpfr cencnerfqy kyqlrshmsi highkqfmcq wcgkdfnmkq 601 yfdehmktht gekpyiceic gksftsrpnm krhrrthtge kpypcdvcgq rfrfsnmlka 661 hkekcfrvsh plpgdpaslp athlqptapl fptapprldt n //
Whole sequence Selected region from: to:
Conserved Domains
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