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MAG: lysoplasmalogenase [Syntrophobacterales bacterium]

GenBank: TFG38532.1

Identical Proteins FASTA Graphics 

LOCUS       TFG38532                 180 aa            linear   ENV 30-MAR-2019
DEFINITION  MAG: lysoplasmalogenase [Syntrophobacterales bacterium].
ACCESSION   TFG38532
VERSION     TFG38532.1
DBLINK      BioProject: PRJNA511814
            BioSample: SAMN11127102
DBSOURCE    accession SPDD01000003.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Syntrophobacterales bacterium (marine sediment metagenome)
  ORGANISM  Syntrophobacterales bacterium
            Bacteria; Pseudomonadati; Thermodesulfobacteriota;
            Syntrophobacteria; Syntrophobacterales.
REFERENCE   1  (residues 1 to 180)
  AUTHORS   Rasigraf,O.
  TITLE     Metagenomic analysis reveals large potential for carbon, nitrogen
            and sulfur cycling in coastal methanic sediments of the Bothnian
            Sea
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 180)
  AUTHORS   Rasigraf,O.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAR-2019) Microbiology, Radboud University Njmegen,
            Heyendaalseweg, Nijmegen 6525AJ, Netherlands
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 20-JUN-2017
            Assembly Method        :: MEGAHIT v. 1.1.1-2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 1.59x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/25/2019 18:58:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 602
            CDSs (total)                      :: 591
            Genes (coding)                    :: 585
            CDSs (with protein)               :: 585
            Genes (RNA)                       :: 11
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 9
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 6
            CDSs (without protein)            :: 6
            Pseudo Genes (ambiguous residues) :: 0 of 6
            Pseudo Genes (frameshifted)       :: 1 of 6
            Pseudo Genes (incomplete)         :: 3 of 6
            Pseudo Genes (internal stop)      :: 2 of 6
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..180
                     /organism="Syntrophobacterales bacterium"
                     /isolate="das_tool.metabat2.89"
                     /isolation_source="Bothnian Sea sediment, site NB8"
                     /db_xref="taxon:2282155"
                     /environmental_sample
                     /geo_loc_name="Sweden: Bothnian Sea"
                     /lat_lon="63.29 N 19.49 E"
                     /collection_date="15-Apr-2015"
                     /collected_by="Caroline Slomp, Utrecht University"
                     /metagenome_source="marine sediment metagenome"
                     /note="metagenomic"
     Protein         1..180
                     /product="lysoplasmalogenase"
     Region          15..>167
                     /region_name="YhhN"
                     /note="YhhN family; cl01505"
                     /db_xref="CDD:470224"
     CDS             1..180
                     /locus_tag="E4H39_00065"
                     /coded_by="SPDD01000003.1:2442..2984"
                     /inference="COORDINATES: protein motif:HMM:PF07947.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mrafiegthe eegtmvniai iagalillvg llffektgnr kgfittktil slffviaviv
       61 qphplpsyyh lllaglilcl vgdfflalpq rgmflaglis fllghvlyil affsvaelrg
      121 liwpgvavvl lisgsvflwl rphlggmkip vffyvviisl mvvgawsilv dcslsiesrv
//
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