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GenBank: TFG38532.1
Identical Proteins FASTA Graphics
LOCUS TFG38532 180 aa linear ENV 30-MAR-2019 DEFINITION MAG: lysoplasmalogenase [Syntrophobacterales bacterium]. ACCESSION TFG38532 VERSION TFG38532.1 DBLINK BioProject: PRJNA511814 BioSample: SAMN11127102 DBSOURCE accession SPDD01000003.1 KEYWORDS ENV; Metagenome Assembled Genome; MAG. SOURCE Syntrophobacterales bacterium (marine sediment metagenome) ORGANISM Syntrophobacterales bacterium Bacteria; Pseudomonadati; Thermodesulfobacteriota; Syntrophobacteria; Syntrophobacterales. REFERENCE 1 (residues 1 to 180) AUTHORS Rasigraf,O. TITLE Metagenomic analysis reveals large potential for carbon, nitrogen and sulfur cycling in coastal methanic sediments of the Bothnian Sea JOURNAL Unpublished REFERENCE 2 (residues 1 to 180) AUTHORS Rasigraf,O. TITLE Direct Submission JOURNAL Submitted (15-MAR-2019) Microbiology, Radboud University Njmegen, Heyendaalseweg, Nijmegen 6525AJ, Netherlands COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 20-JUN-2017 Assembly Method :: MEGAHIT v. 1.1.1-2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 1.59x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/25/2019 18:58:46 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.8 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 602 CDSs (total) :: 591 Genes (coding) :: 585 CDSs (with protein) :: 585 Genes (RNA) :: 11 rRNAs :: 1 (5S) complete rRNAs :: 1 (5S) tRNAs :: 9 ncRNAs :: 1 Pseudo Genes (total) :: 6 CDSs (without protein) :: 6 Pseudo Genes (ambiguous residues) :: 0 of 6 Pseudo Genes (frameshifted) :: 1 of 6 Pseudo Genes (incomplete) :: 3 of 6 Pseudo Genes (internal stop) :: 2 of 6 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..180 /organism="Syntrophobacterales bacterium" /isolate="das_tool.metabat2.89" /isolation_source="Bothnian Sea sediment, site NB8" /db_xref="taxon:2282155" /environmental_sample /geo_loc_name="Sweden: Bothnian Sea" /lat_lon="63.29 N 19.49 E" /collection_date="15-Apr-2015" /collected_by="Caroline Slomp, Utrecht University" /metagenome_source="marine sediment metagenome" /note="metagenomic" Protein 1..180 /product="lysoplasmalogenase" Region 15..>167 /region_name="YhhN" /note="YhhN family; cl01505" /db_xref="CDD:470224" CDS 1..180 /locus_tag="E4H39_00065" /coded_by="SPDD01000003.1:2442..2984" /inference="COORDINATES: protein motif:HMM:PF07947.12" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mrafiegthe eegtmvniai iagalillvg llffektgnr kgfittktil slffviaviv 61 qphplpsyyh lllaglilcl vgdfflalpq rgmflaglis fllghvlyil affsvaelrg 121 liwpgvavvl lisgsvflwl rphlggmkip vffyvviisl mvvgawsilv dcslsiesrv //
Whole sequence Selected region from: to:
Conserved Domains
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