LOCUS RSE15594 85 aa linear BCT 12-DEC-2018
DEFINITION MarR family transcriptional regulator [Escherichia coli].
ACCESSION RSE15594
VERSION RSE15594.1
DBLINK BioProject: PRJNA497126
BioSample: SAMN10248954
DBSOURCE accession RHWM01000016.1
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (residues 1 to 85)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Transmission dynamics of multidrug resistant bacteria on intensive
care unit surfaces
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 85)
AUTHORS D'Souza,A.W., Potter,R.F., Wallace,M., Shupe,A., Patel,S., Sun,S.,
Gul,D., Kwon,J.H., Andleeb,S., Burnham,C.-A.D. and Dantas,G.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2018) Computational and Systems Biology,
Washington University in St. Louis School of Medicine, 660 South
Euclid Avenue, St. Louis, MO 63110, USA
COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 35x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 11/14/2018 00:58:09
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS+
Annotation Software revision :: 4.6
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,241
CDS (total) :: 5,139
Genes (coding) :: 4,948
CDS (coding) :: 4,948
Genes (RNA) :: 102
rRNAs :: 2, 2, 1 (5S, 16S, 23S)
complete rRNAs :: 2, 1, 1 (5S, 16S, 23S)
partial rRNAs :: 1 (16S)
tRNAs :: 83
ncRNAs :: 14
Pseudo Genes (total) :: 191
Pseudo Genes (ambiguous residues) :: 1 of 191
Pseudo Genes (frameshifted) :: 79 of 191
Pseudo Genes (incomplete) :: 102 of 191
Pseudo Genes (internal stop) :: 37 of 191
Pseudo Genes (multiple problems) :: 26 of 191
CRISPR Arrays :: 2
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..85
/organism="Escherichia coli"
/strain="EC_US_18"
/isolation_source="alcohol foam dispenser in hospital
intensive care unit"
/db_xref="taxon:562"
/geo_loc_name="USA"
/collection_date="2016-03"
Protein 1..85
/product="MarR family transcriptional regulator"
CDS 1..85
/locus_tag="EGT78_12055"
/coded_by="RHWM01000016.1:21425..21682"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_001521776.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 mtitivefnv lkvmaekdid wswmvldrtl airnipgfgn vanivtklvn hglvdivnge
61 gnsrpryrvs qyglnlikeq qdnlf
//