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helix-turn-helix transcriptional regulator [Escherichia coli]

GenBank: PSY97571.1

Identical Proteins FASTA Graphics 

LOCUS       PSY97571                 210 aa            linear   BCT 31-MAR-2018
DEFINITION  helix-turn-helix transcriptional regulator [Escherichia coli].
ACCESSION   PSY97571
VERSION     PSY97571.1
DBLINK      BioProject: PRJNA230969
            BioSample: SAMN08668643
DBSOURCE    accession PYQU01000001.1
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 210)
  AUTHORS   Whitehouse,C.A., Lacher,D.W., Mammel,M.K., Barnaba,T. and
            Lorch,J.M.
  TITLE     Whole Genome Sequencing of Escherichia coli isolates from wildlife
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 210)
  AUTHORS   Whitehouse,C.A., Lacher,D.W., Mammel,M.K., Barnaba,T. and
            Lorch,J.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2018) CFSAN-ORS-DM-MMSB, US Food and Drug
            Administration, 5100 Paint Branch Parkway, College Park, MD 20740,
            USA
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.8.2
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 51.3x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/27/2018 00:02:29
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,660
            CDS (total)                       :: 5,552
            Genes (coding)                    :: 5,253
            CDS (coding)                      :: 5,253
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 5, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 2, 4, 2 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 299
            Pseudo Genes (ambiguous residues) :: 0 of 299
            Pseudo Genes (frameshifted)       :: 137 of 299
            Pseudo Genes (incomplete)         :: 152 of 299
            Pseudo Genes (internal stop)      :: 74 of 299
            Pseudo Genes (multiple problems)  :: 56 of 299
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Escherichia coli"
                     /strain="14017-2"
                     /isolation_source="liver"
                     /host="Haliaeetus leucocephalus"
                     /db_xref="taxon:562"
                     /geo_loc_name="USA: OK"
                     /lat_lon="35.0 N 97.1 W"
                     /collection_date="26-Jan-1996"
                     /collected_by="U.S. Geological Survey National Wildlife
                     Health Center"
     Protein         1..210
                     /product="helix-turn-helix transcriptional regulator"
     Region          62..195
                     /region_name="CsgD"
                     /note="DNA-binding transcriptional regulator, CsgD family
                     [Transcription]; COG2771"
                     /db_xref="CDD:442052"
     CDS             1..210
                     /locus_tag="C7B08_01105"
                     /coded_by="complement(PYQU01000001.1:204798..205430)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002413859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mglcsryksl tcnscsmhcq impeesprlq ycanscfcmw peessyfnrg vvegiltknh
       61 narlsgyifv dfsvsflrlf lekdwidyla stdmgivlvs drnmqslany wrkhnsaisa
      121 viynddgldv anekirqlfi grylsftrgn tltqmeftim gymvsgynpy qiaevldmdi
      181 rsiyaykqri ekrmggkine lfirshsvqh
//
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