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GenBank: PSY97571.1
Identical Proteins FASTA Graphics
LOCUS PSY97571 210 aa linear BCT 31-MAR-2018 DEFINITION helix-turn-helix transcriptional regulator [Escherichia coli]. ACCESSION PSY97571 VERSION PSY97571.1 DBLINK BioProject: PRJNA230969 BioSample: SAMN08668643 DBSOURCE accession PYQU01000001.1 KEYWORDS . SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (residues 1 to 210) AUTHORS Whitehouse,C.A., Lacher,D.W., Mammel,M.K., Barnaba,T. and Lorch,J.M. TITLE Whole Genome Sequencing of Escherichia coli isolates from wildlife JOURNAL Unpublished REFERENCE 2 (residues 1 to 210) AUTHORS Whitehouse,C.A., Lacher,D.W., Mammel,M.K., Barnaba,T. and Lorch,J.M. TITLE Direct Submission JOURNAL Submitted (13-MAR-2018) CFSAN-ORS-DM-MMSB, US Food and Drug Administration, 5100 Paint Branch Parkway, College Park, MD 20740, USA COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: SPAdes v. 3.8.2 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 51.3x Sequencing Technology :: Illumina MiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/27/2018 00:02:29 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.4 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 5,660 CDS (total) :: 5,552 Genes (coding) :: 5,253 CDS (coding) :: 5,253 Genes (RNA) :: 108 rRNAs :: 7, 5, 3 (5S, 16S, 23S) complete rRNAs :: 5, 1, 1 (5S, 16S, 23S) partial rRNAs :: 2, 4, 2 (5S, 16S, 23S) tRNAs :: 81 ncRNAs :: 12 Pseudo Genes (total) :: 299 Pseudo Genes (ambiguous residues) :: 0 of 299 Pseudo Genes (frameshifted) :: 137 of 299 Pseudo Genes (incomplete) :: 152 of 299 Pseudo Genes (internal stop) :: 74 of 299 Pseudo Genes (multiple problems) :: 56 of 299 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..210 /organism="Escherichia coli" /strain="14017-2" /isolation_source="liver" /host="Haliaeetus leucocephalus" /db_xref="taxon:562" /geo_loc_name="USA: OK" /lat_lon="35.0 N 97.1 W" /collection_date="26-Jan-1996" /collected_by="U.S. Geological Survey National Wildlife Health Center" Protein 1..210 /product="helix-turn-helix transcriptional regulator" Region 62..195 /region_name="CsgD" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; COG2771" /db_xref="CDD:442052" CDS 1..210 /locus_tag="C7B08_01105" /coded_by="complement(PYQU01000001.1:204798..205430)" /inference="COORDINATES: similar to AA sequence:RefSeq:YP_002413859.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mglcsryksl tcnscsmhcq impeesprlq ycanscfcmw peessyfnrg vvegiltknh 61 narlsgyifv dfsvsflrlf lekdwidyla stdmgivlvs drnmqslany wrkhnsaisa 121 viynddgldv anekirqlfi grylsftrgn tltqmeftim gymvsgynpy qiaevldmdi 181 rsiyaykqri ekrmggkine lfirshsvqh //
Whole sequence Selected region from: to:
Conserved Domains
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