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Holliday junction ATP-dependent DNA helicase RuvA [Staphylococcus sp. HMSC55D02]

GenBank: OHS15087.1

Identical Proteins FASTA Graphics 

LOCUS       OHS15087                 202 aa            linear   BCT 25-OCT-2016
DEFINITION  Holliday junction ATP-dependent DNA helicase RuvA [Staphylococcus
            sp. HMSC55D02].
ACCESSION   OHS15087
VERSION     OHS15087.1
DBLINK      BioProject: PRJNA274526
            BioSample: SAMN04498879
DBSOURCE    accession LTMN01000075.1
KEYWORDS    .
SOURCE      Staphylococcus sp. HMSC55D02
  ORGANISM  Staphylococcus sp. HMSC55D02
            Bacteria; Bacillati; Bacillota; Bacilli; Bacillales;
            Staphylococcaceae; Staphylococcus.
REFERENCE   1  (residues 1 to 202)
  AUTHORS   Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R.,
            Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A.,
            Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and
            Wilson,R.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-FEB-2016) McDonnell Genome Institute, Washington
            University School of Medicine, 4444 Forest Park, St. Louis, MO
            63108, USA
COMMENT     The WUSC is a large strain collection isolated from clinical
            samples. Each sample is associated with metadata, including source,
            isolation site, 16s rRNA, metabolic, and other phenotypic
            information. The goal is to sample an adequate number of important,
            yet minor species, further adding to the catelogue of sequenced
            bacterial genomes and improving the diversity of the genomes
            available to the public. WGS will be preformed on approximely 550
            isolates. Samples were selected based on RDP analysis at the genus
            level. This is a reference genomes for the Human Microbiome Project
            and the work was funded by the National Institutes of Health (NIH)
            grant U54 HG004968.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: Velvet v. 1.1.06
            Genome Coverage       :: 159x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/03/2016 02:21:46
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,363
            CDS (total)                       :: 2,321
            Genes (coding)                    :: 2,263
            CDS (coding)                      :: 2,263
            Genes (RNA)                       :: 42
            rRNAs                             :: 1, 2 (16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 2 (23S)
            tRNAs                             :: 35
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 58
            Pseudo Genes (ambiguous residues) :: 0 of 58
            Pseudo Genes (frameshifted)       :: 14 of 58
            Pseudo Genes (incomplete)         :: 34 of 58
            Pseudo Genes (internal stop)      :: 13 of 58
            Pseudo Genes (multiple problems)  :: 3 of 58
            Genome Coverage                   :: 159x
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..202
                     /organism="Staphylococcus sp. HMSC55D02"
                     /strain="HMSC55D02"
                     /host="Homo sapiens"
                     /db_xref="HMP:3255"
                     /db_xref="taxon:1608874"
     Protein         1..202
                     /product="Holliday junction ATP-dependent DNA helicase
                     RuvA"
     Region          1..200
                     /region_name="ruvA"
                     /note="Holliday junction branch migration protein RuvA;
                     PRK00116"
                     /db_xref="CDD:234645"
     CDS             1..202
                     /locus_tag="HMPREF3255_09290"
                     /coded_by="LTMN01000075.1:40661..41269"
                     /inference="EXISTENCE: similar to AA
                     sequence:RefSeq:WP_002497964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 myayikgqlt qlfpthvvve tqgigyeiqt pnsyrfqqfy nqavtiytsl ivredaqlly
       61 gfineeekem flnlikvtgi gpksalaila tstpnevkra iedendaylt kfpgigkkta
      121 rqiildlkgk vnyteassnd sihiddisst sqkdnyiaea llalealgys kreiskvekt
      181 lqqqvvtsvd eavkiglqsl is
//
Feature
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