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GenBank: OHS15087.1
Identical Proteins FASTA Graphics
LOCUS OHS15087 202 aa linear BCT 25-OCT-2016 DEFINITION Holliday junction ATP-dependent DNA helicase RuvA [Staphylococcus sp. HMSC55D02]. ACCESSION OHS15087 VERSION OHS15087.1 DBLINK BioProject: PRJNA274526 BioSample: SAMN04498879 DBSOURCE accession LTMN01000075.1 KEYWORDS . SOURCE Staphylococcus sp. HMSC55D02 ORGANISM Staphylococcus sp. HMSC55D02 Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. REFERENCE 1 (residues 1 to 202) AUTHORS Mitreva,M., Pepin,K.H., Mihindukulasuriya,K.A., Fulton,R., Fronick,C., O'Laughlin,M., Miner,T., Herter,B., Rosa,B.A., Cordes,M., Tomlinson,C., Wollam,A., Palsikar,V.B., Mardis,E.R. and Wilson,R.K. TITLE Direct Submission JOURNAL Submitted (09-FEB-2016) McDonnell Genome Institute, Washington University School of Medicine, 4444 Forest Park, St. Louis, MO 63108, USA COMMENT The WUSC is a large strain collection isolated from clinical samples. Each sample is associated with metadata, including source, isolation site, 16s rRNA, metabolic, and other phenotypic information. The goal is to sample an adequate number of important, yet minor species, further adding to the catelogue of sequenced bacterial genomes and improving the diversity of the genomes available to the public. WGS will be preformed on approximely 550 isolates. Samples were selected based on RDP analysis at the genus level. This is a reference genomes for the Human Microbiome Project and the work was funded by the National Institutes of Health (NIH) grant U54 HG004968. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: Velvet v. 1.1.06 Genome Coverage :: 159x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/03/2016 02:21:46 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 3.1 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,363 CDS (total) :: 2,321 Genes (coding) :: 2,263 CDS (coding) :: 2,263 Genes (RNA) :: 42 rRNAs :: 1, 2 (16S, 23S) complete rRNAs :: 1 (16S) partial rRNAs :: 2 (23S) tRNAs :: 35 ncRNAs :: 4 Pseudo Genes (total) :: 58 Pseudo Genes (ambiguous residues) :: 0 of 58 Pseudo Genes (frameshifted) :: 14 of 58 Pseudo Genes (incomplete) :: 34 of 58 Pseudo Genes (internal stop) :: 13 of 58 Pseudo Genes (multiple problems) :: 3 of 58 Genome Coverage :: 159x ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..202 /organism="Staphylococcus sp. HMSC55D02" /strain="HMSC55D02" /host="Homo sapiens" /db_xref="HMP:3255" /db_xref="taxon:1608874" Protein 1..202 /product="Holliday junction ATP-dependent DNA helicase RuvA" Region 1..200 /region_name="ruvA" /note="Holliday junction branch migration protein RuvA; PRK00116" /db_xref="CDD:234645" CDS 1..202 /locus_tag="HMPREF3255_09290" /coded_by="LTMN01000075.1:40661..41269" /inference="EXISTENCE: similar to AA sequence:RefSeq:WP_002497964.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 myayikgqlt qlfpthvvve tqgigyeiqt pnsyrfqqfy nqavtiytsl ivredaqlly 61 gfineeekem flnlikvtgi gpksalaila tstpnevkra iedendaylt kfpgigkkta 121 rqiildlkgk vnyteassnd sihiddisst sqkdnyiaea llalealgys kreiskvekt 181 lqqqvvtsvd eavkiglqsl is //
Whole sequence Selected region from: to:
Conserved Domains
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