LOCUS NP_974133 630 aa linear PLN 20-OCT-2022
DEFINITION TRF-like 6 [Arabidopsis thaliana].
ACCESSION NP_974133
VERSION NP_974133.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_202404.2
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 630)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 630)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 630)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 630)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 630)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE35355.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..630
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..630
/product="TRF-like 6"
/calculated_mol_wt=70099
Region 541..591
/region_name="SANT_TRF"
/note="Telomere repeat binding factor-like DNA-binding
domains of the SANT/myb-like family; cd11660"
/db_xref="CDD:212558"
Site order(541..543,561,563..564,577,579..581,583..585,
587..588)
/site_type="DNA binding"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:212558"
CDS 1..630
/gene="TRFL6"
/locus_tag="AT1G72650"
/gene_synonym="F28P22.16; F28P22_16; TRF-like 6"
/coded_by="NM_202404.2:344..2236"
/inference="Similar to RNA sequence,
EST:INSD:BP600584.1,INSD:ES088304.1,INSD:EL104684.1,
INSD:EL095783.1,INSD:ES056385.1,INSD:ES051064.1,
INSD:DR379472.1,INSD:BX834292.1,INSD:BX841369.1,
INSD:EH927056.1,INSD:ES110534.1,INSD:DR348987.1,
INSD:AV797209.1,INSD:ES144142.1,INSD:DR348988.1,
INSD:EH965518.1,INSD:BP865834.1,INSD:AV827092.1,
INSD:ES212091.1,INSD:ES213472.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX815688.1,INSD:BX817724.1"
/note="TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding,
sequence-specific DNA binding transcription factor
activity; INVOLVED IN: response to cadmium ion, response
to salt stress; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005),
Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding
(InterPro:IPR014778), HTH transcriptional regulator,
Myb-type, DNA-binding (InterPro:IPR017930),
Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="Araport:AT1G72650"
/db_xref="GeneID:843597"
/db_xref="TAIR:AT1G72650"
ORIGIN
1 mgtvvgtved rrdmfegnaq tritpfsstn qignpvaykl vrvsgdgslv patdeeilev
61 ndtdmhipsd tcqtigylat deenvevdet dmhiasdacq tigylpaegi psrlsqiess
121 eainsgllhs dnvqpytdqv ksrseyneem lqkveqeerl envhgsqmps tpadaniqcs
181 nennffeedq vhheallqde ckmnesdmme rcsnavaspk etalsaaaqk pdfsrvrgei
241 cldnlpikal qetfratfgr dttvkdktwl krriamglin scdvpttnlr vkdnklignq
301 eksndvtnai rkemgddvra tkmkdapsst dhvnghsngg nhyyasedys seqraakrvr
361 kptrryieel setddkqqnd ksvipskdqr lseksevrsi svssgkrvtv trmvslagse
421 ievpyvshvr rsrprenima llgchssyle dkasaaesnl nlspsqlsse vvnrdsveks
481 asrpvqnefa tsdennvehi lsevdqemep ehidssgnss dennigvpim qggalrrkhh
541 rawtlseiak lvegvskyga gkwseikkhl fsshsyrtsv dlkdkwrnll ktsfaqspsn
601 svgslkkhgs mhiptqillr vrelaekqsq
//