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TRF-like 6 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_974133.1

Identical Proteins FASTA Graphics 

LOCUS       NP_974133                630 aa            linear   PLN 20-OCT-2022
DEFINITION  TRF-like 6 [Arabidopsis thaliana].
ACCESSION   NP_974133
VERSION     NP_974133.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_202404.2
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 630)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (residues 1 to 630)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 630)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 630)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (residues 1 to 630)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE35355.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     Protein         1..630
                     /product="TRF-like 6"
                     /calculated_mol_wt=70099
     Region          541..591
                     /region_name="SANT_TRF"
                     /note="Telomere repeat binding factor-like DNA-binding
                     domains of the SANT/myb-like family; cd11660"
                     /db_xref="CDD:212558"
     Site            order(541..543,561,563..564,577,579..581,583..585,
                     587..588)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:212558"
     CDS             1..630
                     /gene="TRFL6"
                     /locus_tag="AT1G72650"
                     /gene_synonym="F28P22.16; F28P22_16; TRF-like 6"
                     /coded_by="NM_202404.2:344..2236"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP600584.1,INSD:ES088304.1,INSD:EL104684.1,
                     INSD:EL095783.1,INSD:ES056385.1,INSD:ES051064.1,
                     INSD:DR379472.1,INSD:BX834292.1,INSD:BX841369.1,
                     INSD:EH927056.1,INSD:ES110534.1,INSD:DR348987.1,
                     INSD:AV797209.1,INSD:ES144142.1,INSD:DR348988.1,
                     INSD:EH965518.1,INSD:BP865834.1,INSD:AV827092.1,
                     INSD:ES212091.1,INSD:ES213472.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX815688.1,INSD:BX817724.1"
                     /note="TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding,
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: response to cadmium ion, response
                     to salt stress; EXPRESSED IN: 23 plant structures;
                     EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
                     DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005),
                     Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding
                     (InterPro:IPR014778), HTH transcriptional regulator,
                     Myb-type, DNA-binding (InterPro:IPR017930),
                     Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis
                     thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1);
                     Has 35333 Blast hits to 34131 proteins in 2444 species:
                     Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
                     991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
                     (source: NCBI BLink)."
                     /db_xref="Araport:AT1G72650"
                     /db_xref="GeneID:843597"
                     /db_xref="TAIR:AT1G72650"
ORIGIN      
        1 mgtvvgtved rrdmfegnaq tritpfsstn qignpvaykl vrvsgdgslv patdeeilev
       61 ndtdmhipsd tcqtigylat deenvevdet dmhiasdacq tigylpaegi psrlsqiess
      121 eainsgllhs dnvqpytdqv ksrseyneem lqkveqeerl envhgsqmps tpadaniqcs
      181 nennffeedq vhheallqde ckmnesdmme rcsnavaspk etalsaaaqk pdfsrvrgei
      241 cldnlpikal qetfratfgr dttvkdktwl krriamglin scdvpttnlr vkdnklignq
      301 eksndvtnai rkemgddvra tkmkdapsst dhvnghsngg nhyyasedys seqraakrvr
      361 kptrryieel setddkqqnd ksvipskdqr lseksevrsi svssgkrvtv trmvslagse
      421 ievpyvshvr rsrprenima llgchssyle dkasaaesnl nlspsqlsse vvnrdsveks
      481 asrpvqnefa tsdennvehi lsevdqemep ehidssgnss dennigvpim qggalrrkhh
      541 rawtlseiak lvegvskyga gkwseikkhl fsshsyrtsv dlkdkwrnll ktsfaqspsn
      601 svgslkkhgs mhiptqillr vrelaekqsq
//
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Protein clusters for NP_974133.1

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