LOCUS NP_850517 425 aa linear PLN 20-OCT-2022
DEFINITION RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION NP_850517
VERSION NP_850517.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_180186.3
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 425)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (residues 1 to 425)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 425)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 425)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE74256.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..425
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
Protein 1..425
/product="RING/U-box superfamily protein"
/calculated_mol_wt=45378
Region 37..82
/region_name="RING_Ubox"
/note="RING finger (Really Interesting New Gene) domain
and U-box domain superfamily; cl17238"
/db_xref="CDD:473075"
Site order(37,40,57,59,62,65,78,81)
/site_type="other"
/note="cross-brace motif"
/db_xref="CDD:438111"
CDS 1..425
/locus_tag="AT3G05545"
/coded_by="NM_180186.3:387..1664"
/inference="Similar to RNA sequence,
EST:INSD:ES138997.1,INSD:EL199442.1,INSD:EL155061.1,
INSD:EH799257.1,INSD:EL271325.1,INSD:BP828390.1,
INSD:EL093221.1,INSD:EH802860.1,INSD:EH837879.1,
INSD:EH955831.1,INSD:DR243892.1,INSD:ES192064.1,
INSD:EG463599.1,INSD:ES040659.1,INSD:AV813323.1,
INSD:EL044283.1,INSD:EL286813.1,INSD:EG506403.1,
INSD:EH834406.1,INSD:EH931620.1,INSD:DR243890.1,
INSD:EL243179.1,INSD:EL978949.1,INSD:ES001077.1,
INSD:EL008155.1,INSD:EL087464.1,INSD:EG489914.1,
INSD:EL322003.1,INSD:EL070185.1,INSD:DR243888.1,
INSD:DR243889.1,INSD:EL225564.1,INSD:AV530604.1,
INSD:AV440491.1,INSD:BP817292.1,INSD:AV544013.1,
INSD:BX835141.1,INSD:AV810966.1,INSD:AV539951.1,
INSD:EL996341.1,INSD:EL245544.1,INSD:BP833477.1,
INSD:BP859092.1,INSD:BP835259.1,INSD:EL990047.1,
INSD:EH912980.1,INSD:ES101143.1,INSD:BP585273.1,
INSD:AV531539.1,INSD:ES153265.1,INSD:EL980928.1,
INSD:AV798769.1,INSD:DR243891.1,INSD:EH982148.1,
INSD:EL287424.1,INSD:EG506405.1,INSD:ES200392.1,
INSD:ES166822.1,INSD:AV519718.1,INSD:ES152314.1,
INSD:BX838551.1,INSD:EG528171.1,INSD:ES005491.1,
INSD:EL087719.1,INSD:BP817203.1,INSD:AV552482.1,
INSD:BP807424.1,INSD:EL282251.1,INSD:EL033946.1,
INSD:EH969029.1,INSD:EG528172.1,INSD:EH894059.1,
INSD:EL258949.1,INSD:BP608929.1,INSD:DR243886.1,
INSD:DR243887.1,INSD:EG489913.1,INSD:ES051500.1,
INSD:EL263071.1,INSD:EL969680.1,INSD:EH851926.1,
INSD:AV806081.1,INSD:ES161576.1,INSD:AV802282.1,
INSD:EG506401.1,INSD:ES190441.1,INSD:EL982079.1,
INSD:EH950564.1,INSD:EH818400.1,INSD:AV811048.1,
INSD:AV553709.1,INSD:ES186404.1,INSD:EL238143.1,
INSD:EL261892.1,INSD:EL101712.1,INSD:ES173902.1,
INSD:EG506399.1,INSD:EL977028.1,INSD:ES004570.1,
INSD:EH929419.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT001921.1,INSD:DQ059111.1"
/note="RING/U-box superfamily protein; CONTAINS InterPro
DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841),
Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc
finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis
thaliana protein match is: RING/U-box superfamily protein
(TAIR:AT2G47700.1); Has 1560 Blast hits to 1269 proteins
in 195 species: Archae - 0; Bacteria - 91; Metazoa - 627;
Fungi - 277; Plants - 288; Viruses - 4; Other Eukaryotes -
273 (source: NCBI BLink)."
/db_xref="GeneID:819720"
/db_xref="TAIR:AT3G05545"
/db_xref="Araport:AT3G05545"
ORIGIN
1 mglgnkgnkf nfgdndlade asgadgdegd gfgsvacsic letvvkngdr awanlqcdhq
61 fhldcigsaf nakgvmqcpn crkvekgqwl yangcrsype fnvedwvhee diydigayse
121 msfgvhwcpf gssarlpsfe dgefspssyh dllgqqgyyt epaaptaghp cpyvtyfgpv
181 hspssssgga agvsdsssfs shwntgssvs gevptpygfp vdphyhgwdy hpppppppqh
241 fsasgahvgs ptqptpppaa artsrangsd mirprpphft rpfhghsssg ragssvasvp
301 rtppfpgsna rtrdrmqalq ayyqqssaqs hqpdspivsr gpvfpsgrrp argiasgmgs
361 tssssdqagg sgfirfniwe rdpymqsqqa ysvnqmdrep niwtssfneg sgsfhqrhgg
421 gggss
//