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RING/U-box superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_850517.1

Identical Proteins FASTA Graphics 

LOCUS       NP_850517                425 aa            linear   PLN 20-OCT-2022
DEFINITION  RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION   NP_850517
VERSION     NP_850517.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_180186.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 425)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (residues 1 to 425)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 425)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 425)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE74256.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     Protein         1..425
                     /product="RING/U-box superfamily protein"
                     /calculated_mol_wt=45378
     Region          37..82
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(37,40,57,59,62,65,78,81)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..425
                     /locus_tag="AT3G05545"
                     /coded_by="NM_180186.3:387..1664"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES138997.1,INSD:EL199442.1,INSD:EL155061.1,
                     INSD:EH799257.1,INSD:EL271325.1,INSD:BP828390.1,
                     INSD:EL093221.1,INSD:EH802860.1,INSD:EH837879.1,
                     INSD:EH955831.1,INSD:DR243892.1,INSD:ES192064.1,
                     INSD:EG463599.1,INSD:ES040659.1,INSD:AV813323.1,
                     INSD:EL044283.1,INSD:EL286813.1,INSD:EG506403.1,
                     INSD:EH834406.1,INSD:EH931620.1,INSD:DR243890.1,
                     INSD:EL243179.1,INSD:EL978949.1,INSD:ES001077.1,
                     INSD:EL008155.1,INSD:EL087464.1,INSD:EG489914.1,
                     INSD:EL322003.1,INSD:EL070185.1,INSD:DR243888.1,
                     INSD:DR243889.1,INSD:EL225564.1,INSD:AV530604.1,
                     INSD:AV440491.1,INSD:BP817292.1,INSD:AV544013.1,
                     INSD:BX835141.1,INSD:AV810966.1,INSD:AV539951.1,
                     INSD:EL996341.1,INSD:EL245544.1,INSD:BP833477.1,
                     INSD:BP859092.1,INSD:BP835259.1,INSD:EL990047.1,
                     INSD:EH912980.1,INSD:ES101143.1,INSD:BP585273.1,
                     INSD:AV531539.1,INSD:ES153265.1,INSD:EL980928.1,
                     INSD:AV798769.1,INSD:DR243891.1,INSD:EH982148.1,
                     INSD:EL287424.1,INSD:EG506405.1,INSD:ES200392.1,
                     INSD:ES166822.1,INSD:AV519718.1,INSD:ES152314.1,
                     INSD:BX838551.1,INSD:EG528171.1,INSD:ES005491.1,
                     INSD:EL087719.1,INSD:BP817203.1,INSD:AV552482.1,
                     INSD:BP807424.1,INSD:EL282251.1,INSD:EL033946.1,
                     INSD:EH969029.1,INSD:EG528172.1,INSD:EH894059.1,
                     INSD:EL258949.1,INSD:BP608929.1,INSD:DR243886.1,
                     INSD:DR243887.1,INSD:EG489913.1,INSD:ES051500.1,
                     INSD:EL263071.1,INSD:EL969680.1,INSD:EH851926.1,
                     INSD:AV806081.1,INSD:ES161576.1,INSD:AV802282.1,
                     INSD:EG506401.1,INSD:ES190441.1,INSD:EL982079.1,
                     INSD:EH950564.1,INSD:EH818400.1,INSD:AV811048.1,
                     INSD:AV553709.1,INSD:ES186404.1,INSD:EL238143.1,
                     INSD:EL261892.1,INSD:EL101712.1,INSD:ES173902.1,
                     INSD:EG506399.1,INSD:EL977028.1,INSD:ES004570.1,
                     INSD:EH929419.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BT001921.1,INSD:DQ059111.1"
                     /note="RING/U-box superfamily protein; CONTAINS InterPro
                     DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841),
                     Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc
                     finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis
                     thaliana protein match is: RING/U-box superfamily protein
                     (TAIR:AT2G47700.1); Has 1560 Blast hits to 1269 proteins
                     in 195 species: Archae - 0; Bacteria - 91; Metazoa - 627;
                     Fungi - 277; Plants - 288; Viruses - 4; Other Eukaryotes -
                     273 (source: NCBI BLink)."
                     /db_xref="GeneID:819720"
                     /db_xref="TAIR:AT3G05545"
                     /db_xref="Araport:AT3G05545"
ORIGIN      
        1 mglgnkgnkf nfgdndlade asgadgdegd gfgsvacsic letvvkngdr awanlqcdhq
       61 fhldcigsaf nakgvmqcpn crkvekgqwl yangcrsype fnvedwvhee diydigayse
      121 msfgvhwcpf gssarlpsfe dgefspssyh dllgqqgyyt epaaptaghp cpyvtyfgpv
      181 hspssssgga agvsdsssfs shwntgssvs gevptpygfp vdphyhgwdy hpppppppqh
      241 fsasgahvgs ptqptpppaa artsrangsd mirprpphft rpfhghsssg ragssvasvp
      301 rtppfpgsna rtrdrmqalq ayyqqssaqs hqpdspivsr gpvfpsgrrp argiasgmgs
      361 tssssdqagg sgfirfniwe rdpymqsqqa ysvnqmdrep niwtssfneg sgsfhqrhgg
      421 gggss
//
Feature
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Protein clusters for NP_850517.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT3G05545 gene (NM_180186.3).

More about the AT3G05545 gene

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