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CLIP-associated protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_849997.2

Identical Proteins FASTA Graphics 

LOCUS       NP_849997               1439 aa            linear   PLN 20-OCT-2022
DEFINITION  CLIP-associated protein [Arabidopsis thaliana].
ACCESSION   NP_849997
VERSION     NP_849997.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_179666.5
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 1439)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (residues 1 to 1439)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 1439)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 1439)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEC06980.
            
            On Feb 17, 2004 this sequence version replaced NP_849997.1.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..1439
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     Protein         1..1439
                     /product="CLIP-associated protein"
                     /calculated_mol_wt=158821
     Region          16..186
                     /region_name="HEAT"
                     /note="HEAT repeat [General function prediction only];
                     COG1413"
                     /db_xref="CDD:441023"
     Site            order(17..18,21,24..25,59..60,63,66..67,70,100..101,104,
                     107..108,111,136..137,140,143..144,177..178,181,184..185)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          39..70
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          82..112
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          121..144
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          155..186
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          283..501
                     /region_name="CLASP_N"
                     /note="CLASP N terminal; pfam12348"
                     /db_xref="CDD:432496"
     Region          796..818
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Site            order(810..811,814,817..818,854..855,858,861..862,865,
                     895..896,899,902,931..932,935,939..940,977..978,981,
                     984..985)
                     /site_type="other"
                     /note="putative peptide binding site [polypeptide
                     binding]"
                     /db_xref="CDD:293787"
     Region          837..865
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          877..903
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          912..940
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          951..986
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          <1249..>1434
                     /region_name="HSH155"
                     /note="U2 snRNP spliceosome subunit [RNA processing and
                     modification]; COG5181"
                     /db_xref="CDD:227508"
     Region          1253..1277
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          1293..1321
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          1331..1357
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     Region          1369..1395
                     /region_name="HEAT repeat"
                     /note="HEAT repeat [structural motif]"
                     /db_xref="CDD:293787"
     CDS             1..1439
                     /gene="CLASP"
                     /locus_tag="AT2G20190"
                     /gene_synonym="ATCLASP; CLIP-associated protein;
                     CLIP-ASSOCIATED PROTEIN; T2G17.1; T2G17_1"
                     /coded_by="NM_179666.5:303..4622"
                     /inference="Similar to RNA sequence,
                     EST:INSD:R64872.1,INSD:AV529675.1,INSD:EL324704.1,
                     INSD:ES170642.1,INSD:EG444156.1,INSD:W43759.1,
                     INSD:AV528618.1,INSD:EL294440.1,INSD:ES051615.1,
                     INSD:EH810944.1,INSD:ES181131.1,INSD:ES108520.1,
                     INSD:EL159316.1,INSD:EL230315.1,INSD:AV548316.1,
                     INSD:AA042460.1,INSD:EL096045.1,INSD:EH945887.1,
                     INSD:ES130641.1,INSD:AV523909.1,INSD:EH862851.1,
                     INSD:EL178889.1,INSD:ES046324.1,INSD:ES052600.1,
                     INSD:AV523038.1,INSD:ES029671.1,INSD:EL145973.1,
                     INSD:AI995094.1,INSD:AV546294.1,INSD:AI995924.1,
                     INSD:BP780885.1,INSD:EL223248.1,INSD:AV829056.1,
                     INSD:EL338765.1,INSD:ES044495.1,INSD:EH877152.1,
                     INSD:EH896551.1,INSD:AV804161.1,INSD:EL174370.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY091025.1,INSD:AK226745.1"
                     /note="CLIP-associated protein (CLASP); FUNCTIONS IN:
                     binding; INVOLVED IN: mitosis, protein stabilization, cell
                     growth; LOCATED IN: spindle microtubule, plasma membrane;
                     EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13
                     growth stages; CONTAINS InterPro DOMAIN/s: HEAT
                     (InterPro:IPR000357), Armadillo-like helical
                     (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133),
                     Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast
                     hits to 34131 proteins in 2444 species: Archae - 798;
                     Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
                     531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
                     BLink)."
                     /db_xref="Araport:AT2G20190"
                     /db_xref="GeneID:816539"
                     /db_xref="TAIR:AT2G20190"
ORIGIN      
        1 meealemara kdtkermaav erlhqlleas rkslspaevt slvdscldll kdsnfrvsqg
       61 alqalasaav lagehlklhl nalvpavver lgdskqpvrd aarrllttlm evssptiive
      121 ragsyawmhk swrvreefar tvtsaiglfa stelplqrvi lapilqmlnd pnqavreaai
      181 lcieemymqg gsqfreelqr hhlpsymvkd inarleriep qlrstdgrsa hhvvnevkas
      241 svnpkksspr akaptrensl fggdaditek piepikvyse kelirefeki aatlvpekdw
      301 smrisamrrv eglvaggatd yscfrgllkq lvgplstqla drrstivkqa chllcllske
      361 llgdfeacae tfipvlfklv vitvlviaes adnciktmlr nckaarvlpr iaesakhdrn
      421 ailrarccey alltlehwpd apeiqrsvdl yedlirccva damsevrata rmcyrmfakt
      481 wpdrsrrlfs sfdpviqrli needggihrr haspsvrerh sqpsfsqtsa psnlpgygts
      541 aivamdrssn lssggslssg lllsqskdvn kgserslesv lqsskqkvsa iesmlrglhi
      601 sdrqnpaalr sssldlgvdp pssrdppfha vapasnshts saaaesthsi nkgsnrnggl
      661 glsdiitqiq askdsgrssy rgnllseshp tfssltakrg sernerssle esndarevrr
      721 fmaghfdrqq mdtayrdltf resnashvpn fqrpllrknv ggrmsagrrr sfddsqlqig
      781 disnfvdgpa slnealndgl nsssdwcarv aafnflqtll qqgpkgaqev iqsfekvmkl
      841 flrhlddphh kvaqaalstl adlipscrkp fesymervlp hvfsrlidpk evvrqpcsst
      901 leivsktysv dsllpallrs ldeqrspkak laviefains fnryagnpei sgnsgilklw
      961 lakltpltrd kntklkeasi tciisvynhy dsagllnyil slsveeqnsl rralkqytpr
     1021 ievdllnymq skkekqriks ydpsdaigts seegyagask kniflgrysg gsidsdsgrk
     1081 wsssqeptmi tggvgqnvss gtqeklyqnv rtgissasdl lnpkdsdytf asagqnsisr
     1141 tspngsseni eilddlspph leknglnlts vdslegrhen evsreldlgh ymltsikvnt
     1201 tpesgpsipq ilhmingsdg spssskksgl qqlieasvan eesvwtkyfn qiltvvlevl
     1261 ddedfsikel alslisemlk sqkdamedsv eiviekllhv skdtvpkvst eaeqclttvl
     1321 sqydpfrcls vivpllvted ektlvacinc ltklvgrlsq eelmdqlssf lpavfeafgs
     1381 qsadvrktvv fclvdiyiml gkaflpyleg lnstqvrlvt iyanrisqar ngapidadt
//
Feature
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Protein clusters for NP_849997.2

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the CLASP gene (NM_179666.5).

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