LOCUS NP_849997 1439 aa linear PLN 20-OCT-2022
DEFINITION CLIP-associated protein [Arabidopsis thaliana].
ACCESSION NP_849997
VERSION NP_849997.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_179666.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 1439)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 1439)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 1439)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 1439)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC06980.
On Feb 17, 2004 this sequence version replaced NP_849997.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..1439
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..1439
/product="CLIP-associated protein"
/calculated_mol_wt=158821
Region 16..186
/region_name="HEAT"
/note="HEAT repeat [General function prediction only];
COG1413"
/db_xref="CDD:441023"
Site order(17..18,21,24..25,59..60,63,66..67,70,100..101,104,
107..108,111,136..137,140,143..144,177..178,181,184..185)
/site_type="other"
/note="putative peptide binding site [polypeptide
binding]"
/db_xref="CDD:293787"
Region 39..70
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 82..112
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 121..144
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 155..186
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 283..501
/region_name="CLASP_N"
/note="CLASP N terminal; pfam12348"
/db_xref="CDD:432496"
Region 796..818
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Site order(810..811,814,817..818,854..855,858,861..862,865,
895..896,899,902,931..932,935,939..940,977..978,981,
984..985)
/site_type="other"
/note="putative peptide binding site [polypeptide
binding]"
/db_xref="CDD:293787"
Region 837..865
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 877..903
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 912..940
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 951..986
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region <1249..>1434
/region_name="HSH155"
/note="U2 snRNP spliceosome subunit [RNA processing and
modification]; COG5181"
/db_xref="CDD:227508"
Region 1253..1277
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 1293..1321
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 1331..1357
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
Region 1369..1395
/region_name="HEAT repeat"
/note="HEAT repeat [structural motif]"
/db_xref="CDD:293787"
CDS 1..1439
/gene="CLASP"
/locus_tag="AT2G20190"
/gene_synonym="ATCLASP; CLIP-associated protein;
CLIP-ASSOCIATED PROTEIN; T2G17.1; T2G17_1"
/coded_by="NM_179666.5:303..4622"
/inference="Similar to RNA sequence,
EST:INSD:R64872.1,INSD:AV529675.1,INSD:EL324704.1,
INSD:ES170642.1,INSD:EG444156.1,INSD:W43759.1,
INSD:AV528618.1,INSD:EL294440.1,INSD:ES051615.1,
INSD:EH810944.1,INSD:ES181131.1,INSD:ES108520.1,
INSD:EL159316.1,INSD:EL230315.1,INSD:AV548316.1,
INSD:AA042460.1,INSD:EL096045.1,INSD:EH945887.1,
INSD:ES130641.1,INSD:AV523909.1,INSD:EH862851.1,
INSD:EL178889.1,INSD:ES046324.1,INSD:ES052600.1,
INSD:AV523038.1,INSD:ES029671.1,INSD:EL145973.1,
INSD:AI995094.1,INSD:AV546294.1,INSD:AI995924.1,
INSD:BP780885.1,INSD:EL223248.1,INSD:AV829056.1,
INSD:EL338765.1,INSD:ES044495.1,INSD:EH877152.1,
INSD:EH896551.1,INSD:AV804161.1,INSD:EL174370.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY091025.1,INSD:AK226745.1"
/note="CLIP-associated protein (CLASP); FUNCTIONS IN:
binding; INVOLVED IN: mitosis, protein stabilization, cell
growth; LOCATED IN: spindle microtubule, plasma membrane;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: HEAT
(InterPro:IPR000357), Armadillo-like helical
(InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133),
Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink)."
/db_xref="Araport:AT2G20190"
/db_xref="GeneID:816539"
/db_xref="TAIR:AT2G20190"
ORIGIN
1 meealemara kdtkermaav erlhqlleas rkslspaevt slvdscldll kdsnfrvsqg
61 alqalasaav lagehlklhl nalvpavver lgdskqpvrd aarrllttlm evssptiive
121 ragsyawmhk swrvreefar tvtsaiglfa stelplqrvi lapilqmlnd pnqavreaai
181 lcieemymqg gsqfreelqr hhlpsymvkd inarleriep qlrstdgrsa hhvvnevkas
241 svnpkksspr akaptrensl fggdaditek piepikvyse kelirefeki aatlvpekdw
301 smrisamrrv eglvaggatd yscfrgllkq lvgplstqla drrstivkqa chllcllske
361 llgdfeacae tfipvlfklv vitvlviaes adnciktmlr nckaarvlpr iaesakhdrn
421 ailrarccey alltlehwpd apeiqrsvdl yedlirccva damsevrata rmcyrmfakt
481 wpdrsrrlfs sfdpviqrli needggihrr haspsvrerh sqpsfsqtsa psnlpgygts
541 aivamdrssn lssggslssg lllsqskdvn kgserslesv lqsskqkvsa iesmlrglhi
601 sdrqnpaalr sssldlgvdp pssrdppfha vapasnshts saaaesthsi nkgsnrnggl
661 glsdiitqiq askdsgrssy rgnllseshp tfssltakrg sernerssle esndarevrr
721 fmaghfdrqq mdtayrdltf resnashvpn fqrpllrknv ggrmsagrrr sfddsqlqig
781 disnfvdgpa slnealndgl nsssdwcarv aafnflqtll qqgpkgaqev iqsfekvmkl
841 flrhlddphh kvaqaalstl adlipscrkp fesymervlp hvfsrlidpk evvrqpcsst
901 leivsktysv dsllpallrs ldeqrspkak laviefains fnryagnpei sgnsgilklw
961 lakltpltrd kntklkeasi tciisvynhy dsagllnyil slsveeqnsl rralkqytpr
1021 ievdllnymq skkekqriks ydpsdaigts seegyagask kniflgrysg gsidsdsgrk
1081 wsssqeptmi tggvgqnvss gtqeklyqnv rtgissasdl lnpkdsdytf asagqnsisr
1141 tspngsseni eilddlspph leknglnlts vdslegrhen evsreldlgh ymltsikvnt
1201 tpesgpsipq ilhmingsdg spssskksgl qqlieasvan eesvwtkyfn qiltvvlevl
1261 ddedfsikel alslisemlk sqkdamedsv eiviekllhv skdtvpkvst eaeqclttvl
1321 sqydpfrcls vivpllvted ektlvacinc ltklvgrlsq eelmdqlssf lpavfeafgs
1381 qsadvrktvv fclvdiyiml gkaflpyleg lnstqvrlvt iyanrisqar ngapidadt
//