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RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_568826.1

Identical Proteins FASTA Graphics 

LOCUS       NP_568826                460 aa            linear   PLN 20-OCT-2022
DEFINITION  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
            thaliana].
ACCESSION   NP_568826
VERSION     NP_568826.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_124937.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 460)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 460)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 460)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 460)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED96647.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..460
                     /product="RNA-binding (RRM/RBD/RNP motifs) family protein"
                     /calculated_mol_wt=50218
     Region          8..78
                     /region_name="RRM1_hnRNPA_hnRNPD_like"
                     /note="RNA recognition motif 1 (RRM1) found in
                     heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP
                     D subfamilies and similar proteins; cd12325"
                     /db_xref="CDD:409763"
     Site            order(9,11..14,36,38,47..49,51,73,76,78)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409763"
     Region          111..188
                     /region_name="RRM2_Hrp1p"
                     /note="RNA recognition motif 2 (RRM2) found in yeast
                     nuclear polyadenylated RNA-binding protein 4 (Hrp1p or
                     Nab4p) and similar proteins; cd12330"
                     /db_xref="CDD:409767"
     Site            order(113,115,140,142,153,155,181,183,185)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:409767"
     CDS             1..460
                     /locus_tag="AT5G55550"
                     /gene_synonym="MTE17.27; MTE17_27"
                     /coded_by="NM_124937.3:407..1789"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV825563.1,INSD:AV791552.1,INSD:EH903450.1,
                     INSD:EL286814.1,INSD:AV442308.1,INSD:BP666270.1,
                     INSD:AV831982.1,INSD:BP572274.1,INSD:BE526747.1,
                     INSD:AV440734.2,INSD:EL214043.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY050796.1,INSD:AY096460.1"
                     /note="RNA-binding (RRM/RBD/RNP motifs) family protein;
                     FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
                     acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED
                     DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA
                     recognition motif, RNP-1 (InterPro:IPR000504),
                     Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
                     BEST Arabidopsis thaliana protein match is: RNA-binding
                     (RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2);
                     Has 30201 Blast hits to 17322 proteins in 780 species:
                     Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
                     3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
                     (source: NCBI BLink)."
                     /db_xref="GeneID:835649"
                     /db_xref="TAIR:AT5G55550"
                     /db_xref="Araport:AT5G55550"
ORIGIN      
        1 mesdlgklfi ggiswdtdee rlrdyfsnyg dvveavimrd ratgrargfg fivfadpcvs
       61 ervimdkhii dgrtveakka vprddqqvlk rhaspihlms pvhggggrtk kifvgglpss
      121 iteeefknyf dqfgtiadvv vmydhntqrp rgfgfitfds ddavdrvlhk tfhelngklv
      181 evkravpkei spvsnirspl asgvnygggs nrmpansyfn nfapgpgfyn slgpvgrrfs
      241 pvigsgrnav safglglnhd lslnlnpscd gtsstfgynr ipsnpyfnga spnrytspig
      301 hnrtespyns nnrdlwgnrt dtagpgwnln vsngnnrgnw glpsssavsn dnngfgrnyg
      361 tssglssspf ngfegsigel yrggsvysds twqqqqlpsq ssheldnlsr aygydidnvg
      421 sdpsandpet yngsynvgnr qtnrgnkkih lnktcnldtf
//
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Protein clusters for NP_568826.1

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More about the AT5G55550 gene

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