LOCUS NP_568826 460 aa linear PLN 20-OCT-2022
DEFINITION RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana].
ACCESSION NP_568826
VERSION NP_568826.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_124937.3
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 460)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 460)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 460)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 460)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED96647.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..460
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..460
/product="RNA-binding (RRM/RBD/RNP motifs) family protein"
/calculated_mol_wt=50218
Region 8..78
/region_name="RRM1_hnRNPA_hnRNPD_like"
/note="RNA recognition motif 1 (RRM1) found in
heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP
D subfamilies and similar proteins; cd12325"
/db_xref="CDD:409763"
Site order(9,11..14,36,38,47..49,51,73,76,78)
/site_type="other"
/note="RNA binding site [nucleotide binding]"
/db_xref="CDD:409763"
Region 111..188
/region_name="RRM2_Hrp1p"
/note="RNA recognition motif 2 (RRM2) found in yeast
nuclear polyadenylated RNA-binding protein 4 (Hrp1p or
Nab4p) and similar proteins; cd12330"
/db_xref="CDD:409767"
Site order(113,115,140,142,153,155,181,183,185)
/site_type="other"
/note="RNA binding site [nucleotide binding]"
/db_xref="CDD:409767"
CDS 1..460
/locus_tag="AT5G55550"
/gene_synonym="MTE17.27; MTE17_27"
/coded_by="NM_124937.3:407..1789"
/inference="Similar to RNA sequence,
EST:INSD:AV825563.1,INSD:AV791552.1,INSD:EH903450.1,
INSD:EL286814.1,INSD:AV442308.1,INSD:BP666270.1,
INSD:AV831982.1,INSD:BP572274.1,INSD:BE526747.1,
INSD:AV440734.2,INSD:EL214043.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY050796.1,INSD:AY096460.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
(RRM/RBD/RNP motifs) family protein (TAIR:AT4G26650.2);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:835649"
/db_xref="TAIR:AT5G55550"
/db_xref="Araport:AT5G55550"
ORIGIN
1 mesdlgklfi ggiswdtdee rlrdyfsnyg dvveavimrd ratgrargfg fivfadpcvs
61 ervimdkhii dgrtveakka vprddqqvlk rhaspihlms pvhggggrtk kifvgglpss
121 iteeefknyf dqfgtiadvv vmydhntqrp rgfgfitfds ddavdrvlhk tfhelngklv
181 evkravpkei spvsnirspl asgvnygggs nrmpansyfn nfapgpgfyn slgpvgrrfs
241 pvigsgrnav safglglnhd lslnlnpscd gtsstfgynr ipsnpyfnga spnrytspig
301 hnrtespyns nnrdlwgnrt dtagpgwnln vsngnnrgnw glpsssavsn dnngfgrnyg
361 tssglssspf ngfegsigel yrggsvysds twqqqqlpsq ssheldnlsr aygydidnvg
421 sdpsandpet yngsynvgnr qtnrgnkkih lnktcnldtf
//