LOCUS NP_567943 262 aa linear PLN 20-OCT-2022
DEFINITION RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION NP_567943
VERSION NP_567943.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_119554.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 262)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 262)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 262)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 262)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE86297.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..262
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..262
/product="RING/U-box superfamily protein"
/calculated_mol_wt=29869
Region 71..125
/region_name="RING_Ubox"
/note="RING finger (Really Interesting New Gene) domain
and U-box domain superfamily; cl17238"
/db_xref="CDD:473075"
Site order(74,77,89,91,94,97,113,116)
/site_type="other"
/note="cross-brace motif"
/db_xref="CDD:438111"
CDS 1..262
/locus_tag="AT4G33940"
/gene_synonym="F17I5.1"
/coded_by="NM_119554.4:67..855"
/inference="Similar to RNA sequence,
EST:INSD:DR320349.1,INSD:EL151061.1,INSD:BP604751.1,
INSD:ES199226.1,INSD:DR320352.1,INSD:AV536365.1,
INSD:EL969608.1,INSD:BP660908.1,INSD:EL973536.1,
INSD:EL214612.1,INSD:DR320350.1,INSD:DR320348.1,
INSD:EL150783.1,INSD:EH932070.1,INSD:EH937447.1,
INSD:BP632373.1,INSD:EH847453.1,INSD:ES159794.1,
INSD:DR372266.1,INSD:EL310077.1,INSD:EL999327.1,
INSD:EL169647.1,INSD:AU240038.1,INSD:AV784599.1,
INSD:AU231410.1,INSD:BP581150.1,INSD:ES162557.1,
INSD:AV537097.1,INSD:ES056411.1,INSD:BP800061.1,
INSD:AV823597.1,INSD:DR320351.1,INSD:EL155793.1,
INSD:BP804633.1,INSD:EL187499.1,INSD:ES203284.1,
INSD:EH930515.1,INSD:EL275826.1,INSD:DR320347.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY085300.1,INSD:BT024492.1,INSD:BT021998.1,
INSD:BX829073.1,INSD:AK119155.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; INVOLVED IN: response to chitin; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 14 growth
stages; CONTAINS InterPro DOMAIN/s: Zinc finger,
RING-type, conserved site (InterPro:IPR017907), Zinc
finger, RING-type (InterPro:IPR001841); BEST Arabidopsis
thaliana protein match is: RING/U-box protein with domain
of unknown function (DUF 1232) (TAIR:AT1G72175.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:829539"
/db_xref="TAIR:AT4G33940"
/db_xref="Araport:AT4G33940"
ORIGIN
1 msslgssksl rdemevttad vfpevnaaav tenldrnelv ladgvvsaee rniepdnrge
61 rkiesesppe ddvcpicfgs ftvpcrgncg hwycgncilq ywnyaaisrp ckcpmcvrhi
121 tklspepslq erqeqevkev ldkvrrynrl fvggltgfvq kvhelpflvk rmvwhmmdtd
181 vnnlyfhevr ifamfmstly taaefnfipt ggfrivtvfd yaaiamilil rlvgiyrrrr
241 laqqvrhlaa aaiepeleqr el
//