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RING/U-box superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_567943.1

Identical Proteins FASTA Graphics 

LOCUS       NP_567943                262 aa            linear   PLN 20-OCT-2022
DEFINITION  RING/U-box superfamily protein [Arabidopsis thaliana].
ACCESSION   NP_567943
VERSION     NP_567943.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_119554.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 262)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 262)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 262)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 262)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE86297.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..262
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..262
                     /product="RING/U-box superfamily protein"
                     /calculated_mol_wt=29869
     Region          71..125
                     /region_name="RING_Ubox"
                     /note="RING finger (Really Interesting New Gene) domain
                     and U-box domain superfamily; cl17238"
                     /db_xref="CDD:473075"
     Site            order(74,77,89,91,94,97,113,116)
                     /site_type="other"
                     /note="cross-brace motif"
                     /db_xref="CDD:438111"
     CDS             1..262
                     /locus_tag="AT4G33940"
                     /gene_synonym="F17I5.1"
                     /coded_by="NM_119554.4:67..855"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR320349.1,INSD:EL151061.1,INSD:BP604751.1,
                     INSD:ES199226.1,INSD:DR320352.1,INSD:AV536365.1,
                     INSD:EL969608.1,INSD:BP660908.1,INSD:EL973536.1,
                     INSD:EL214612.1,INSD:DR320350.1,INSD:DR320348.1,
                     INSD:EL150783.1,INSD:EH932070.1,INSD:EH937447.1,
                     INSD:BP632373.1,INSD:EH847453.1,INSD:ES159794.1,
                     INSD:DR372266.1,INSD:EL310077.1,INSD:EL999327.1,
                     INSD:EL169647.1,INSD:AU240038.1,INSD:AV784599.1,
                     INSD:AU231410.1,INSD:BP581150.1,INSD:ES162557.1,
                     INSD:AV537097.1,INSD:ES056411.1,INSD:BP800061.1,
                     INSD:AV823597.1,INSD:DR320351.1,INSD:EL155793.1,
                     INSD:BP804633.1,INSD:EL187499.1,INSD:ES203284.1,
                     INSD:EH930515.1,INSD:EL275826.1,INSD:DR320347.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY085300.1,INSD:BT024492.1,INSD:BT021998.1,
                     INSD:BX829073.1,INSD:AK119155.1"
                     /note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
                     ion binding; INVOLVED IN: response to chitin; EXPRESSED
                     IN: 22 plant structures; EXPRESSED DURING: 14 growth
                     stages; CONTAINS InterPro DOMAIN/s: Zinc finger,
                     RING-type, conserved site (InterPro:IPR017907), Zinc
                     finger, RING-type (InterPro:IPR001841); BEST Arabidopsis
                     thaliana protein match is: RING/U-box protein with domain
                     of unknown function (DUF 1232) (TAIR:AT1G72175.1); Has
                     30201 Blast hits to 17322 proteins in 780 species: Archae
                     - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
                     Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
                     (source: NCBI BLink)."
                     /db_xref="GeneID:829539"
                     /db_xref="TAIR:AT4G33940"
                     /db_xref="Araport:AT4G33940"
ORIGIN      
        1 msslgssksl rdemevttad vfpevnaaav tenldrnelv ladgvvsaee rniepdnrge
       61 rkiesesppe ddvcpicfgs ftvpcrgncg hwycgncilq ywnyaaisrp ckcpmcvrhi
      121 tklspepslq erqeqevkev ldkvrrynrl fvggltgfvq kvhelpflvk rmvwhmmdtd
      181 vnnlyfhevr ifamfmstly taaefnfipt ggfrivtvfd yaaiamilil rlvgiyrrrr
      241 laqqvrhlaa aaiepeleqr el
//
Feature
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Protein clusters for NP_567943.1

Reference sequence information

  • RefSeq protein isoforms
    See the other reference sequence protein isoform for the AT4G33940 gene (NP_001329714.1).

More about the AT4G33940 gene

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