LOCUS NP_197272 497 aa linear PLN 20-OCT-2022
DEFINITION MATE efflux family protein [Arabidopsis thaliana].
ACCESSION NP_197272
VERSION NP_197272.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_121776.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 497)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 497)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 497)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 497)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED92457.
On Aug 20, 2002 this sequence version replaced NP_197272.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..497
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..497
/product="MATE efflux family protein"
/calculated_mol_wt=54489
Region 34..469
/region_name="MATE_eukaryotic"
/note="Eukaryotic members of the multidrug and toxic
compound extrusion (MATE) family; cd13132"
/db_xref="CDD:240537"
Site order(272,276,304,307,386,390,417,443,447)
/site_type="other"
/note="putative cation binding site [ion binding]"
/db_xref="CDD:240537"
CDS 1..497
/locus_tag="AT5G17700"
/gene_synonym="MVA3.5; MVA3_5"
/coded_by="NM_121776.5:268..1761"
/inference="Similar to RNA sequence,
EST:INSD:DR274333.1,INSD:BE530457.1,INSD:BP822605.1,
INSD:BP590334.1,INSD:BP652388.1,INSD:CF651425.1,
INSD:CF651424.1,INSD:DR274334.1,INSD:AV567311.1,
INSD:BP636323.1,INSD:BP824774.1,INSD:AV830289.1,
INSD:AV563642.1,INSD:BP581702.1,INSD:EH830701.1,
INSD:Z18054.1,INSD:BP573613.1,INSD:BP641704.1,
INSD:BP838539.1,INSD:BP823790.1,INSD:BP838890.1,
INSD:BP851335.1,INSD:AV566788.1,INSD:EH922587.1,
INSD:BP590366.1,INSD:AV811069.1,INSD:BP817974.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT000259.1,INSD:AY099666.1"
/note="MATE efflux family protein; FUNCTIONS IN:
antiporter activity, drug transmembrane transporter
activity, transporter activity; INVOLVED IN: drug
transmembrane transport, transmembrane transport; LOCATED
IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Multi antimicrobial extrusion protein MatE
(InterPro:IPR002528); BEST Arabidopsis thaliana protein
match is: MATE efflux family protein (TAIR:AT3G03620.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="GeneID:831637"
/db_xref="TAIR:AT5G17700"
/db_xref="Araport:AT5G17700"
ORIGIN
1 msggggemee rllngseteq rreslylrkk iwsevrkmwr ialpstlfrv msfgcvvvaq
61 afighssetg laayallqst firfiygima gmssatetlc gqaygaeqyh mmgiylqrsw
121 ivdtfiatlf vpfivlagpi lrllgqnvvi setvdeiypw vipylysivf tmtmqmylqa
181 qmknaiigil stlalvldia atwwcvsvmg mgihgallgl nisswsvaia efvyvfggwc
241 phtwtgfsta afldlipmlk lsissgfmlc leywymsiiv lmsgyakdan iaisafsicq
301 yiyswemnic fglmgaacvr vanelgkgda davrfsikvv lvvsavigvi csalclafgg
361 qisylfsdsq avsdavadls ivlsisilfn iiqpilsgva igagmqsmva lvnlasyyai
421 gvplgvllvy vfnfgikglw sgmlagvgiq tlilcyviyk tdwelevkkt nermktwtln
481 lpavqsttis trdeerk
//