LOCUS NP_196112 440 aa linear PLN 20-OCT-2022
DEFINITION EAP30/Vps36 family protein [Arabidopsis thaliana].
ACCESSION NP_196112
VERSION NP_196112.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_120574.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 440)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (residues 1 to 440)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 440)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 440)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AED90804.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..440
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
Protein 1..440
/product="EAP30/Vps36 family protein"
/calculated_mol_wt=48903
Region 18..111
/region_name="Vps36_ESCRT-II"
/note="Vacuolar protein sorting protein 36 Vps36;
pfam11605"
/db_xref="CDD:402964"
Region 174..398
/region_name="EAP30"
/note="EAP30/Vps36 family; pfam04157"
/db_xref="CDD:461201"
CDS 1..440
/locus_tag="AT5G04920"
/gene_synonym="MUG13.23; MUG13_23; VPS36"
/coded_by="NM_120574.5:367..1689"
/inference="Similar to RNA sequence,
EST:INSD:CB252086.1,INSD:BP809592.1,INSD:BP573215.1,
INSD:ES035434.1,INSD:BP606411.1,INSD:CD529571.1,
INSD:EH819683.1,INSD:AU237228.1,INSD:AV551794.1,
INSD:EL085012.1,INSD:BP850000.1,INSD:CK121519.1,
INSD:BP643178.1,INSD:CB252090.1,INSD:BP805240.1,
INSD:EL313924.1,INSD:BP856041.1,INSD:AV830024.1,
INSD:BP804476.1,INSD:EH896751.1,INSD:BP861074.1,
INSD:AV809652.1,INSD:DR287548.1,INSD:EL245297.1,
INSD:BP841895.1,INSD:BP862345.1,INSD:BP824129.1,
INSD:EL019885.1,INSD:ES068033.1,INSD:BP808818.1,
INSD:ES090985.1,INSD:EL080129.1,INSD:EL991758.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY072089.1,INSD:AY096570.1"
/note="EAP30/Vps36 family protein; CONTAINS InterPro
DOMAIN/s: EAP30 (InterPro:IPR007286), Vacuolar protein
sorting protein, Vps36 (InterPro:IPR021648); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
/db_xref="GeneID:830374"
/db_xref="TAIR:AT5G04920"
/db_xref="Araport:AT5G04920"
ORIGIN
1 masgsssiai gglfenaevt tsgrpvlrrn evecfllssi didseddppr ftalrsgnli
61 ltthrliwip sqsnesvpss iplsavthiy shkksiksmf hsprirfqad pgsivvtivf
121 rgkgdfdgfl sklwecwrgr aweeeekses etsksgsgtv aqglygndgt vrmvglagil
181 rkeqeqwest dkslqdafqd lnalmskake mvslaekmrq kllsapssqn gstddeemgs
241 keemqqwmls vgiispvtke sagalyhqel srqladfvri plekaggmis ltdmyyhfnr
301 argtelispd dlwqactlwe kfdvpvmlrk fdsgvmviqn kshsdeevms rirmlvtkte
361 tlrvgvtasd aaltlkiapa makehllsae tkgllcrdms pdglrfyfnl fpeidptnlh
421 ivkefgtyge wikatsllsv
//