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EAP30/Vps36 family protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_196112.1

Identical Proteins FASTA Graphics 

LOCUS       NP_196112                440 aa            linear   PLN 20-OCT-2022
DEFINITION  EAP30/Vps36 family protein [Arabidopsis thaliana].
ACCESSION   NP_196112
VERSION     NP_196112.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_120574.5
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 440)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (residues 1 to 440)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 440)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 440)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AED90804.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     Protein         1..440
                     /product="EAP30/Vps36 family protein"
                     /calculated_mol_wt=48903
     Region          18..111
                     /region_name="Vps36_ESCRT-II"
                     /note="Vacuolar protein sorting protein 36 Vps36;
                     pfam11605"
                     /db_xref="CDD:402964"
     Region          174..398
                     /region_name="EAP30"
                     /note="EAP30/Vps36 family; pfam04157"
                     /db_xref="CDD:461201"
     CDS             1..440
                     /locus_tag="AT5G04920"
                     /gene_synonym="MUG13.23; MUG13_23; VPS36"
                     /coded_by="NM_120574.5:367..1689"
                     /inference="Similar to RNA sequence,
                     EST:INSD:CB252086.1,INSD:BP809592.1,INSD:BP573215.1,
                     INSD:ES035434.1,INSD:BP606411.1,INSD:CD529571.1,
                     INSD:EH819683.1,INSD:AU237228.1,INSD:AV551794.1,
                     INSD:EL085012.1,INSD:BP850000.1,INSD:CK121519.1,
                     INSD:BP643178.1,INSD:CB252090.1,INSD:BP805240.1,
                     INSD:EL313924.1,INSD:BP856041.1,INSD:AV830024.1,
                     INSD:BP804476.1,INSD:EH896751.1,INSD:BP861074.1,
                     INSD:AV809652.1,INSD:DR287548.1,INSD:EL245297.1,
                     INSD:BP841895.1,INSD:BP862345.1,INSD:BP824129.1,
                     INSD:EL019885.1,INSD:ES068033.1,INSD:BP808818.1,
                     INSD:ES090985.1,INSD:EL080129.1,INSD:EL991758.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AY072089.1,INSD:AY096570.1"
                     /note="EAP30/Vps36 family protein; CONTAINS InterPro
                     DOMAIN/s: EAP30 (InterPro:IPR007286), Vacuolar protein
                     sorting protein, Vps36 (InterPro:IPR021648); Has 1807
                     Blast hits to 1807 proteins in 277 species: Archae - 0;
                     Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
                     Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink)."
                     /db_xref="GeneID:830374"
                     /db_xref="TAIR:AT5G04920"
                     /db_xref="Araport:AT5G04920"
ORIGIN      
        1 masgsssiai gglfenaevt tsgrpvlrrn evecfllssi didseddppr ftalrsgnli
       61 ltthrliwip sqsnesvpss iplsavthiy shkksiksmf hsprirfqad pgsivvtivf
      121 rgkgdfdgfl sklwecwrgr aweeeekses etsksgsgtv aqglygndgt vrmvglagil
      181 rkeqeqwest dkslqdafqd lnalmskake mvslaekmrq kllsapssqn gstddeemgs
      241 keemqqwmls vgiispvtke sagalyhqel srqladfvri plekaggmis ltdmyyhfnr
      301 argtelispd dlwqactlwe kfdvpvmlrk fdsgvmviqn kshsdeevms rirmlvtkte
      361 tlrvgvtasd aaltlkiapa makehllsae tkgllcrdms pdglrfyfnl fpeidptnlh
      421 ivkefgtyge wikatsllsv
//
Feature
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Protein clusters for NP_196112.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the AT5G04920 gene (NM_120574.5).

More about the AT5G04920 gene

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