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Lateral root primordium (LRP) protein-like protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_195349.1

Identical Proteins FASTA Graphics 

LOCUS       NP_195349                322 aa            linear   PLN 20-OCT-2022
DEFINITION  Lateral root primordium (LRP) protein-like protein [Arabidopsis
            thaliana].
ACCESSION   NP_195349
VERSION     NP_195349.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_119794.3
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 322)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 322)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 322)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 322)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE86640.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..322
                     /product="Lateral root primordium (LRP) protein-like
                     protein"
                     /calculated_mol_wt=34013
     Region          91..246
                     /region_name="DUF702"
                     /note="Domain of unknown function (DUF702); pfam05142"
                     /db_xref="CDD:461560"
     CDS             1..322
                     /gene="STY2"
                     /locus_tag="AT4G36260"
                     /gene_synonym="F23E13.150; F23E13_150; SHI RELATED
                     SEQUENCE 2; SRS2; STYLISH 2"
                     /coded_by="NM_119794.3:640..1608"
                     /inference="Similar to RNA sequence,
                     EST:INSD:AV441607.1,INSD:AV439493.1,INSD:DR750303.1,
                     INSD:DR750001.1,INSD:EH797265.1"
                     /note="STYLISH 2 (STY2); FUNCTIONS IN: sequence-specific
                     DNA binding transcription factor activity; INVOLVED IN:
                     xylem and phloem pattern formation, style development,
                     auxin homeostasis, negative regulation of gibberellic acid
                     mediated signaling pathway, stigma development; LOCATED
                     IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED
                     DURING: 4 anthesis, F mature embryo stage, petal
                     differentiation and expansion stage, E expanded cotyledon
                     stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
                     Lateral Root Primordium type 1, C-terminal
                     (InterPro:IPR006511), Zinc finger, Lateral Root Primordium
                     type 1 (InterPro:IPR006510), Protein of unknown function
                     DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana
                     protein match is: SHI-related sequence 4
                     (TAIR:AT2G18120.1); Has 2502 Blast hits to 2002 proteins
                     in 224 species: Archae - 2; Bacteria - 961; Metazoa - 458;
                     Fungi - 79; Plants - 348; Viruses - 38; Other Eukaryotes -
                     616 (source: NCBI BLink)."
                     /db_xref="GeneID:829783"
                     /db_xref="TAIR:AT4G36260"
                     /db_xref="Araport:AT4G36260"
ORIGIN      
        1 magifslggn nnnngdeeee nqqqqktnwv wyrsnantnn inpsssqqvw qippeqmlmh
       61 hhshpqqqsl dlypghqidv sdlatssrsi tiscrdcgnq akkdcthmrc rtccksrgfd
      121 csthvrstwi pvarrrerqq qlhmstsggg ggsgsggagg ggssipkrhr dptlpgtsss
      181 srlpshsagl emgeasfpge vssdalfrcv kmsgvddggd gqyayqttvn igghlfkgil
      241 ydqgpessym sggsggsdhq sssagggggg hpfnppvvtd ggggvssamf vdpnsggyys
      301 snmttsvfmp pgtqfyqnpp rs
//
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Protein clusters for NP_195349.1

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