LOCUS NP_194301 390 aa linear PLN 20-OCT-2022
DEFINITION Galactose oxidase/kelch repeat superfamily protein [Arabidopsis
thaliana].
ACCESSION NP_194301
VERSION NP_194301.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_118703.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 390)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 390)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 390)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 390)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE85101.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..390
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..390
/product="Galactose oxidase/kelch repeat superfamily
protein"
/calculated_mol_wt=43809
Region 28..70
/region_name="F-box_AtAFR-like"
/note="F-box domain found in Arabidopsis thaliana protein
ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins;
cd22152"
/db_xref="CDD:438923"
Site order(30,34,37..38,41..42,45,47..48,53..55,57)
/site_type="other"
/note="putative Skp1 binding site [polypeptide binding]"
/db_xref="CDD:438923"
Region <114..196
/region_name="NanM"
/note="N-acetylneuraminic acid mutarotase [Cell
wall/membrane/envelope biogenesis]; COG3055"
/db_xref="CDD:442289"
Region 134..176
/region_name="KELCH repeat"
/note="KELCH repeat [structural motif]"
/db_xref="CDD:276965"
Region 169..>337
/region_name="NanM"
/note="N-acetylneuraminic acid mutarotase [Cell
wall/membrane/envelope biogenesis]; COG3055"
/db_xref="CDD:442289"
Region 180..221
/region_name="KELCH repeat"
/note="KELCH repeat [structural motif]"
/db_xref="CDD:276965"
Region 222..268
/region_name="KELCH repeat"
/note="KELCH repeat [structural motif]"
/db_xref="CDD:276965"
Region 274..311
/region_name="KELCH repeat"
/note="KELCH repeat [structural motif]"
/db_xref="CDD:276965"
CDS 1..390
/locus_tag="AT4G25710"
/gene_synonym="L73G19.90; L73G19_90"
/coded_by="NM_118703.4:95..1267"
/inference="Similar to RNA sequence,
EST:INSD:EL051623.1,INSD:DR356403.1,INSD:EG437361.1,
INSD:BP795068.1,INSD:ES056423.1,INSD:DR382847.1,
INSD:EG437359.1,INSD:EL083928.1,INSD:EG437330.1,
INSD:BP849162.1,INSD:EG437358.1,INSD:EL105989.1,
INSD:EH877116.1,INSD:AV543444.1,INSD:EG437353.1,
INSD:EG437328.1,INSD:EG437360.1,INSD:EG437335.1,
INSD:EG437352.1,INSD:EG437336.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK176558.1,INSD:BT029546.1"
/note="Galactose oxidase/kelch repeat superfamily protein;
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like
(InterPro:IPR001810), Galactose oxidase/kelch,
beta-propeller (InterPro:IPR011043), Kelch repeat type 1
(InterPro:IPR006652), Kelch repeat type 2
(InterPro:IPR011498), Kelch related (InterPro:IPR013089),
Kelch-type beta propeller (InterPro:IPR015915); BEST
Arabidopsis thaliana protein match is: Galactose
oxidase/kelch repeat superfamily protein
(TAIR:AT5G51250.1); Has 986 Blast hits to 967 proteins in
50 species: Archae - 4; Bacteria - 5; Metazoa - 105; Fungi
- 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink)."
/db_xref="GeneID:828676"
/db_xref="TAIR:AT4G25710"
/db_xref="Araport:AT4G25710"
ORIGIN
1 merlvsgett tssnmkkkkk kvssttnpsl pddlvlviia rvsilyypil slvsksfrsl
61 laspelykvr sllgrresrl yvcinmysyk ngpswftlcr kpdrtttssn keedrssgyv
121 laripiphsp ltqryslaav gsniynigvt ryhhltsssv wvldcrshtw rqapslpvel
181 frvsvsvldq kiyvaglhqe dgsdslknsv tvldtetqvs drvaipcsvs qgkeifists
241 vggkvnlvtg rkvvdynpve gsweevgdtm cefmfskcfc vvgnvlysca idrvfrwydt
301 evrtwrnlec liggrlpkls prafvslady ggklavfwnq gvgdwqmlwc avialerrnt
361 ceilgnvews dhvlhvpkir syynalsatl
//