U.S. flag

An official website of the United States government

Galactose oxidase/kelch repeat superfamily protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_194301.1

Identical Proteins FASTA Graphics 

LOCUS       NP_194301                390 aa            linear   PLN 20-OCT-2022
DEFINITION  Galactose oxidase/kelch repeat superfamily protein [Arabidopsis
            thaliana].
ACCESSION   NP_194301
VERSION     NP_194301.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_118703.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 390)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 390)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 390)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 390)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE85101.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..390
                     /product="Galactose oxidase/kelch repeat superfamily
                     protein"
                     /calculated_mol_wt=43809
     Region          28..70
                     /region_name="F-box_AtAFR-like"
                     /note="F-box domain found in Arabidopsis thaliana protein
                     ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins;
                     cd22152"
                     /db_xref="CDD:438923"
     Site            order(30,34,37..38,41..42,45,47..48,53..55,57)
                     /site_type="other"
                     /note="putative Skp1 binding site [polypeptide binding]"
                     /db_xref="CDD:438923"
     Region          <114..196
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          134..176
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          169..>337
                     /region_name="NanM"
                     /note="N-acetylneuraminic acid mutarotase [Cell
                     wall/membrane/envelope biogenesis]; COG3055"
                     /db_xref="CDD:442289"
     Region          180..221
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          222..268
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     Region          274..311
                     /region_name="KELCH repeat"
                     /note="KELCH repeat [structural motif]"
                     /db_xref="CDD:276965"
     CDS             1..390
                     /locus_tag="AT4G25710"
                     /gene_synonym="L73G19.90; L73G19_90"
                     /coded_by="NM_118703.4:95..1267"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL051623.1,INSD:DR356403.1,INSD:EG437361.1,
                     INSD:BP795068.1,INSD:ES056423.1,INSD:DR382847.1,
                     INSD:EG437359.1,INSD:EL083928.1,INSD:EG437330.1,
                     INSD:BP849162.1,INSD:EG437358.1,INSD:EL105989.1,
                     INSD:EH877116.1,INSD:AV543444.1,INSD:EG437353.1,
                     INSD:EG437328.1,INSD:EG437360.1,INSD:EG437335.1,
                     INSD:EG437352.1,INSD:EG437336.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AK176558.1,INSD:BT029546.1"
                     /note="Galactose oxidase/kelch repeat superfamily protein;
                     CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like
                     (InterPro:IPR001810), Galactose oxidase/kelch,
                     beta-propeller (InterPro:IPR011043), Kelch repeat type 1
                     (InterPro:IPR006652), Kelch repeat type 2
                     (InterPro:IPR011498), Kelch related (InterPro:IPR013089),
                     Kelch-type beta propeller (InterPro:IPR015915); BEST
                     Arabidopsis thaliana protein match is: Galactose
                     oxidase/kelch repeat superfamily protein
                     (TAIR:AT5G51250.1); Has 986 Blast hits to 967 proteins in
                     50 species: Archae - 4; Bacteria - 5; Metazoa - 105; Fungi
                     - 0; Plants - 870; Viruses - 0; Other Eukaryotes - 2
                     (source: NCBI BLink)."
                     /db_xref="GeneID:828676"
                     /db_xref="TAIR:AT4G25710"
                     /db_xref="Araport:AT4G25710"
ORIGIN      
        1 merlvsgett tssnmkkkkk kvssttnpsl pddlvlviia rvsilyypil slvsksfrsl
       61 laspelykvr sllgrresrl yvcinmysyk ngpswftlcr kpdrtttssn keedrssgyv
      121 laripiphsp ltqryslaav gsniynigvt ryhhltsssv wvldcrshtw rqapslpvel
      181 frvsvsvldq kiyvaglhqe dgsdslknsv tvldtetqvs drvaipcsvs qgkeifists
      241 vggkvnlvtg rkvvdynpve gsweevgdtm cefmfskcfc vvgnvlysca idrvfrwydt
      301 evrtwrnlec liggrlpkls prafvslady ggklavfwnq gvgdwqmlwc avialerrnt
      361 ceilgnvews dhvlhvpkir syynalsatl
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Protein clusters for NP_194301.1

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.