U.S. flag

An official website of the United States government

RING-H2 finger A1A [Arabidopsis thaliana]

NCBI Reference Sequence: NP_192876.1

Identical Proteins FASTA Graphics 

LOCUS       NP_192876                159 aa            linear   PLN 20-OCT-2022
DEFINITION  RING-H2 finger A1A [Arabidopsis thaliana].
ACCESSION   NP_192876
VERSION     NP_192876.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_117208.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 159)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 159)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 159)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 159)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE83002.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..159
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..159
                     /product="RING-H2 finger A1A"
                     /calculated_mol_wt=18178
     Region          83..133
                     /region_name="RING-H2_RHA1-like"
                     /note="RING finger, H2 subclass, found in Arabidopsis
                     thaliana RING-H2 finger A1a (RHA1A), A1b (RHA1B) and
                     similar proteins; cd23121"
                     /db_xref="CDD:438483"
     Site            113..118
                     /site_type="active"
                     /note="putative active site [active]"
                     /db_xref="CDD:438483"
     CDS             1..159
                     /gene="RHA1A"
                     /locus_tag="AT4G11370"
                     /gene_synonym="F8L21.160; F8L21_160; RING-H2 finger A1A;
                     RING-H2 FINGER PROTEIN RHA1A"
                     /coded_by="NM_117208.4:290..769"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR307883.1,INSD:CD529399.1,INSD:T46666.1,
                     INSD:DR307889.1,INSD:BX835006.1,INSD:CD532917.1,
                     INSD:CD531561.1,INSD:DR307891.1,INSD:DR307890.1,
                     INSD:DR307886.1,INSD:DR307887.1,INSD:DR307884.1,
                     INSD:CD529577.1,INSD:DR307893.1,INSD:CD531468.1,
                     INSD:DR373386.1,INSD:DR307892.1,INSD:DR307885.1,
                     INSD:AI994975.1,INSD:DR307888.1,INSD:CD532537.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY086119.1,INSD:AF078683.1,INSD:DQ059120.1"
                     /note="RING-H2 finger A1A (RHA1A); FUNCTIONS IN: zinc ion
                     binding; EXPRESSED IN: 21 plant structures; EXPRESSED
                     DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
                     finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4
                     RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana
                     protein match is: RING-H2 finger A1B (TAIR:AT4G11360.1);
                     Has 7373 Blast hits to 7354 proteins in 262 species:
                     Archae - 0; Bacteria - 0; Metazoa - 1768; Fungi - 541;
                     Plants - 4120; Viruses - 12; Other Eukaryotes - 932
                     (source: NCBI BLink)."
                     /db_xref="GeneID:826739"
                     /db_xref="TAIR:AT4G11370"
                     /db_xref="Araport:AT4G11370"
ORIGIN      
        1 mglpedfite lqipsyilki lyvigffrdi vdalcpyigl prfldhnets apdltrhals
       61 tsaslaneli pvvrfsdlpt dpedcctvcl sdfesddkvr qlpkcghvfh hycldrwivd
      121 ynkmkcpvcr hrflpkekyt qsdwgsgsdw fsdevestn
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Protein clusters for NP_192876.1

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the RHA1A gene (NM_117208.4).

More about the RHA1A gene

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.