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light-mediated development protein 1 / deetiolated1 (DET1) [Arabidopsis thaliana]

NCBI Reference Sequence: NP_192756.2

Identical Proteins FASTA Graphics 

LOCUS       NP_192756                543 aa            linear   PLN 20-OCT-2022
DEFINITION  light-mediated development protein 1 / deetiolated1 (DET1)
            [Arabidopsis thaliana].
ACCESSION   NP_192756
VERSION     NP_192756.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_117086.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 543)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 543)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 543)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 543)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE82852.
            
            On Feb 17, 2004 this sequence version replaced NP_192756.1.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..543
                     /product="light-mediated development protein 1 /
                     deetiolated1 (DET1)"
                     /calculated_mol_wt=62361
     Region          122..543
                     /region_name="Det1"
                     /note="De-etiolated protein 1 Det1; pfam09737"
                     /db_xref="CDD:462868"
     CDS             1..543
                     /gene="DET1"
                     /locus_tag="AT4G10180"
                     /gene_synonym="ATDET1; DE-ETIOLATED 1; FUS2; FUSCA 2;
                     T9A4.17"
                     /coded_by="NM_117086.4:133..1764"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL117509.1,INSD:EH812016.1,INSD:EH802694.1,
                     INSD:EL985658.1,INSD:AI999511.1,INSD:EL982489.1,
                     INSD:EL977708.1,INSD:EL016046.1,INSD:EL217947.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:BT015348.1,INSD:BX827134.1,INSD:BT020454.1,
                     INSD:BX826906.1"
                     /note="DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic
                     activity; INVOLVED IN: DNA repair, negative regulation of
                     photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
                     plant structures; EXPRESSED DURING: 13 growth stages;
                     CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1
                     (InterPro:IPR019138), Six-hairpin glycosidase-like
                     (InterPro:IPR008928); Has 248 Blast hits to 240 proteins
                     in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106;
                     Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes -
                     10 (source: NCBI BLink)."
                     /db_xref="GeneID:826609"
                     /db_xref="TAIR:AT4G10180"
                     /db_xref="Araport:AT4G10180"
ORIGIN      
        1 mftsgnvtar vferqirtpp pgasvnrarh fyenlvpsyt lydvespdhc frkftedglf
       61 lisfsrnhqe livyrpswlt ysttddsttt lpplprrask fdsfftqlys vnlassneli
      121 ckdfflyhqt rrfglfatst aqihdsssps ndavpgvpsi dkitfvllrl ddgvvlderv
      181 flhdfvnlah nmgvflyddl lailslryqr ihllqirdsg hlvdaraigy fcreddelfl
      241 nsssqammsq dkskqqslsg skeddtgeng lrhslsqpsg snsflsgvkq rllsfifrei
      301 wneesdnvmr vqslkkkfyf hfqdyvdlii wkvqfldrqh llikfgsvdg gvtrsadhhp
      361 affavynmet tdivafyqns aedlyqlfeq fsdhftvsss tpfmnfvtsh snnvyaleql
      421 kytknksnsf sqfvkkmlls lpfscqsqsp spyfdqslfr fdeklisaad rhrqssdnpi
      481 kfisrrqpqt lkfkikpgpe cgtadgrskk icsflfhphl plaisiqqtl fmppsvvnih
      541 frr
//
Feature
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Protein clusters for NP_192756.2

Reference sequence information

  • RefSeq mRNA
    See reference mRNA sequence for the DET1 gene (NM_117086.4).

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