LOCUS NP_192756 543 aa linear PLN 20-OCT-2022
DEFINITION light-mediated development protein 1 / deetiolated1 (DET1)
[Arabidopsis thaliana].
ACCESSION NP_192756
VERSION NP_192756.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_117086.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 543)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (residues 1 to 543)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 543)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 543)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE82852.
On Feb 17, 2004 this sequence version replaced NP_192756.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..543
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
Protein 1..543
/product="light-mediated development protein 1 /
deetiolated1 (DET1)"
/calculated_mol_wt=62361
Region 122..543
/region_name="Det1"
/note="De-etiolated protein 1 Det1; pfam09737"
/db_xref="CDD:462868"
CDS 1..543
/gene="DET1"
/locus_tag="AT4G10180"
/gene_synonym="ATDET1; DE-ETIOLATED 1; FUS2; FUSCA 2;
T9A4.17"
/coded_by="NM_117086.4:133..1764"
/inference="Similar to RNA sequence,
EST:INSD:EL117509.1,INSD:EH812016.1,INSD:EH802694.1,
INSD:EL985658.1,INSD:AI999511.1,INSD:EL982489.1,
INSD:EL977708.1,INSD:EL016046.1,INSD:EL217947.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT015348.1,INSD:BX827134.1,INSD:BT020454.1,
INSD:BX826906.1"
/note="DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic
activity; INVOLVED IN: DNA repair, negative regulation of
photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1
(InterPro:IPR019138), Six-hairpin glycosidase-like
(InterPro:IPR008928); Has 248 Blast hits to 240 proteins
in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106;
Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes -
10 (source: NCBI BLink)."
/db_xref="GeneID:826609"
/db_xref="TAIR:AT4G10180"
/db_xref="Araport:AT4G10180"
ORIGIN
1 mftsgnvtar vferqirtpp pgasvnrarh fyenlvpsyt lydvespdhc frkftedglf
61 lisfsrnhqe livyrpswlt ysttddsttt lpplprrask fdsfftqlys vnlassneli
121 ckdfflyhqt rrfglfatst aqihdsssps ndavpgvpsi dkitfvllrl ddgvvlderv
181 flhdfvnlah nmgvflyddl lailslryqr ihllqirdsg hlvdaraigy fcreddelfl
241 nsssqammsq dkskqqslsg skeddtgeng lrhslsqpsg snsflsgvkq rllsfifrei
301 wneesdnvmr vqslkkkfyf hfqdyvdlii wkvqfldrqh llikfgsvdg gvtrsadhhp
361 affavynmet tdivafyqns aedlyqlfeq fsdhftvsss tpfmnfvtsh snnvyaleql
421 kytknksnsf sqfvkkmlls lpfscqsqsp spyfdqslfr fdeklisaad rhrqssdnpi
481 kfisrrqpqt lkfkikpgpe cgtadgrskk icsflfhphl plaisiqqtl fmppsvvnih
541 frr
//