LOCUS NP_188618 835 aa linear PLN 20-OCT-2022
DEFINITION pre-mRNA-processing protein 40C [Arabidopsis thaliana].
ACCESSION NP_188618
VERSION NP_188618.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_112874.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 835)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (residues 1 to 835)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 835)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 835)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE76298.
On May 26, 2011 this sequence version replaced NP_188618.2.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..835
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
Protein 1..835
/product="pre-mRNA-processing protein 40C"
/calculated_mol_wt=92676
Region <24..230
/region_name="PHA03247"
/note="large tegument protein UL36; Provisional"
/db_xref="CDD:223021"
Region 249..>625
/region_name="PRP40"
/note="Splicing factor [RNA processing and modification];
COG5104"
/db_xref="CDD:227435"
Region 693..745
/region_name="FF"
/note="FF domain; pfam01846"
/db_xref="CDD:426471"
CDS 1..835
/gene="PRP40C"
/locus_tag="AT3G19840"
/gene_synonym="ATPRP40C; pre-mRNA-processing protein 40C"
/coded_by="NM_112874.4:241..2748"
/inference="Similar to RNA sequence,
EST:INSD:BE845184.1,INSD:EL251681.1,INSD:BP613313.1,
INSD:AU229099.1,INSD:AV523821.1,INSD:BP630124.1,
INSD:AV523857.1,INSD:AV529577.1,INSD:EH951628.1"
/note="pre-mRNA-processing protein 40C (PRP40C); CONTAINS
InterPro DOMAIN/s: FF domain (InterPro:IPR002713),
WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis
thaliana protein match is: pre-mRNA-processing protein 40A
(TAIR:AT1G44910.2); Has 7513 Blast hits to 5748 proteins
in 436 species: Archae - 33; Bacteria - 336; Metazoa -
3654; Fungi - 967; Plants - 481; Viruses - 7; Other
Eukaryotes - 2035 (source: NCBI BLink)."
/db_xref="GeneID:821521"
/db_xref="TAIR:AT3G19840"
/db_xref="Araport:AT3G19840"
ORIGIN
1 megenttdpp yttaassgqs ifvrpppiap vlattsnfsq selkelhsms iastgfvsqs
61 vpysvtaqwg tnaaassnvn pipqaspmla napfgrpgtl appglmtspp afpgsnpfst
121 tprpgmsagp aqmnpgihph myppyhslpg tpqgmwlqpp smggiprapf lshpttfpgs
181 ypfpvrgisp nlpysgshpl gaspmgsvgn vhalpgrqpd ispgrkteel sgiddragsq
241 lvgnrldawt ahkseagvly yynsvtgqst yekppgfgge pdkvpvqpip vsmeslpgtd
301 walvstndgk kyyynnktkv sswqipaevk dfgkkleera mesvasvpsa dltekgsdlt
361 slsapaisng grdaaslktt nfgssaldlv kkklhdsgmp vsstitsean sgkttevtps
421 gesgnstgkv kdapgagals dsssdseded sgpskeecsk qfkemlkerg iapfskweke
481 lpkiifdprf kaipshsvrr slfeqyvktr aeeerrekra ahkaaiegfr qllddastdi
541 dqhtdyrafk kkwgndlrfe aierkeregl lnervlslkr saeqkaqeir aaaasdfktm
601 lrereisins hwskvkdslr nepryrsvah edrevfyyey iaelkaaqrg ddhemkarde
661 edklrerere lrkrkerevq evervrqkir rkeasssyqa llvekirdpe aswteskpil
721 erdpqkrasn pdlepadkek lfrdhvksly ercvhdfkal laealsseaa tlqtedgkta
781 lnswstakqv lkpdiryskm prqdrevvwr ryvedisrkq rhenyqeekq rdykt
//