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pre-mRNA-processing protein 40C [Arabidopsis thaliana]

NCBI Reference Sequence: NP_188618.3

Identical Proteins FASTA Graphics 

LOCUS       NP_188618                835 aa            linear   PLN 20-OCT-2022
DEFINITION  pre-mRNA-processing protein 40C [Arabidopsis thaliana].
ACCESSION   NP_188618
VERSION     NP_188618.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_112874.4
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 835)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (residues 1 to 835)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 835)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 835)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE76298.
            
            On May 26, 2011 this sequence version replaced NP_188618.2.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     Protein         1..835
                     /product="pre-mRNA-processing protein 40C"
                     /calculated_mol_wt=92676
     Region          <24..230
                     /region_name="PHA03247"
                     /note="large tegument protein UL36; Provisional"
                     /db_xref="CDD:223021"
     Region          249..>625
                     /region_name="PRP40"
                     /note="Splicing factor [RNA processing and modification];
                     COG5104"
                     /db_xref="CDD:227435"
     Region          693..745
                     /region_name="FF"
                     /note="FF domain; pfam01846"
                     /db_xref="CDD:426471"
     CDS             1..835
                     /gene="PRP40C"
                     /locus_tag="AT3G19840"
                     /gene_synonym="ATPRP40C; pre-mRNA-processing protein 40C"
                     /coded_by="NM_112874.4:241..2748"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BE845184.1,INSD:EL251681.1,INSD:BP613313.1,
                     INSD:AU229099.1,INSD:AV523821.1,INSD:BP630124.1,
                     INSD:AV523857.1,INSD:AV529577.1,INSD:EH951628.1"
                     /note="pre-mRNA-processing protein 40C (PRP40C); CONTAINS
                     InterPro DOMAIN/s: FF domain (InterPro:IPR002713),
                     WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis
                     thaliana protein match is: pre-mRNA-processing protein 40A
                     (TAIR:AT1G44910.2); Has 7513 Blast hits to 5748 proteins
                     in 436 species: Archae - 33; Bacteria - 336; Metazoa -
                     3654; Fungi - 967; Plants - 481; Viruses - 7; Other
                     Eukaryotes - 2035 (source: NCBI BLink)."
                     /db_xref="GeneID:821521"
                     /db_xref="TAIR:AT3G19840"
                     /db_xref="Araport:AT3G19840"
ORIGIN      
        1 megenttdpp yttaassgqs ifvrpppiap vlattsnfsq selkelhsms iastgfvsqs
       61 vpysvtaqwg tnaaassnvn pipqaspmla napfgrpgtl appglmtspp afpgsnpfst
      121 tprpgmsagp aqmnpgihph myppyhslpg tpqgmwlqpp smggiprapf lshpttfpgs
      181 ypfpvrgisp nlpysgshpl gaspmgsvgn vhalpgrqpd ispgrkteel sgiddragsq
      241 lvgnrldawt ahkseagvly yynsvtgqst yekppgfgge pdkvpvqpip vsmeslpgtd
      301 walvstndgk kyyynnktkv sswqipaevk dfgkkleera mesvasvpsa dltekgsdlt
      361 slsapaisng grdaaslktt nfgssaldlv kkklhdsgmp vsstitsean sgkttevtps
      421 gesgnstgkv kdapgagals dsssdseded sgpskeecsk qfkemlkerg iapfskweke
      481 lpkiifdprf kaipshsvrr slfeqyvktr aeeerrekra ahkaaiegfr qllddastdi
      541 dqhtdyrafk kkwgndlrfe aierkeregl lnervlslkr saeqkaqeir aaaasdfktm
      601 lrereisins hwskvkdslr nepryrsvah edrevfyyey iaelkaaqrg ddhemkarde
      661 edklrerere lrkrkerevq evervrqkir rkeasssyqa llvekirdpe aswteskpil
      721 erdpqkrasn pdlepadkek lfrdhvksly ercvhdfkal laealsseaa tlqtedgkta
      781 lnswstakqv lkpdiryskm prqdrevvwr ryvedisrkq rhenyqeekq rdykt
//
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Protein clusters for NP_188618.3

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