LOCUS NP_187887 2055 aa linear PLN 20-OCT-2022
DEFINITION SNF2 domain-containing protein / helicase domain-containing protein
[Arabidopsis thaliana].
ACCESSION NP_187887
VERSION NP_187887.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_112117.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 2055)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (residues 1 to 2055)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 2055)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 2055)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE75248.
On Feb 17, 2004 this sequence version replaced NP_187887.2.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..2055
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
Protein 1..2055
/product="SNF2 domain-containing protein / helicase
domain-containing protein"
/calculated_mol_wt=233918
Region 36..106
/region_name="HSA"
/note="domain in helicases and associated with SANT
domains; smart00573"
/db_xref="CDD:214727"
Region 536..758
/region_name="DEXQc_SRCAP"
/note="DEXH/Q-box helicase domain of SRCAP; cd18003"
/db_xref="CDD:350761"
Region 554..1488
/region_name="DISARM_DrmD_b"
/note="DISARM system SNF2-like helicase DrmD, short form;
NF038318"
/db_xref="CDD:468472"
Site order(563..569,603,664..665)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350761"
Region 1064..1199
/region_name="SF2_C_SNF"
/note="C-terminal helicase domain of the SNF family
helicases; cd18793"
/db_xref="CDD:350180"
Site order(1100..1101,1109,1151,1172..1173)
/site_type="DNA binding"
/note="DNA binding site [nucleotide binding]"
/db_xref="CDD:350180"
Site order(1157..1158,1160,1183,1186)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:350180"
CDS 1..2055
/gene="PIE1"
/locus_tag="AT3G12810"
/gene_synonym="chr13; PHOTOPERIOD-INDEPENDENT EARLY
FLOWERING 1; SRCAP"
/coded_by="NM_112117.5:595..6762"
/inference="Similar to RNA sequence,
EST:INSD:CB518238.1,INSD:EL991129.1,INSD:ES009706.1,
INSD:EL205627.1,INSD:EL100947.1,INSD:EL302768.1,
INSD:EL327867.1,INSD:ES072235.1,INSD:EG487625.1,
INSD:EH961164.1,INSD:EH974221.1,INSD:ES138614.1,
INSD:ES125822.1,INSD:EG487623.1,INSD:EL982493.1,
INSD:ES008234.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY279398.1"
/note="PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1);
FUNCTIONS IN: helicase activity, DNA binding, ATP binding,
nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED
IN: SWI/SNF complex, cell wall, chromatin remodeling
complex; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA
(InterPro:IPR006562), HAS subgroup (InterPro:IPR013999),
Helicase/SANT-associated, DNA binding
(InterPro:IPR014012), SNF2-related (InterPro:IPR000330),
MYB-like (InterPro:IPR017877), SANT, DNA-binding
(InterPro:IPR001005), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: INO80 ortholog
(TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins
in 2357 species: Archae - 246; Bacteria - 10217; Metazoa -
11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other
Eukaryotes - 9924 (source: NCBI BLink)."
/db_xref="GeneID:820463"
/db_xref="TAIR:AT3G12810"
/db_xref="Araport:AT3G12810"
ORIGIN
1 maskggkskp divmasksgk skpdnesrak rqktleapke prrpkthwdh vleemawlsk
61 dfeserkwkl aqakkvalra skgmldqasr eerklkeeeq rlrkvalnis kdmkkfwmkv
121 eklvlykhql vrnekkkkam dkqlefllgq terystmlae nlvepykqgq ntpskpllti
181 esksdeerae qippeinssa glesgspeld edydlksede teddedtiee dekhftkrer
241 qeelealqne vdlpveellr rytsgrvsre tspvkdened nltsvsrvts pvkdenqdnl
301 asvgqdhged knnlaaseet egnpsvrrsn dsyghlaise thshdlepgm ttasvksrke
361 dhtydfndeq edvdfvlang eekddeatla veeelakadn edhveeiall qkesempiev
421 llarykedfg gkdisedese ssfavsedsi vdsdenrqqa dldddnvdlt eckldpepcs
481 envegtfhev aedndkdssd kiadaaaaar saqptgftys ttkvrtklpf llkhslreyq
541 higldwlvtm yekklngila demglgktim tiallahlac dkgiwgphli vvptsvmlnw
601 eteflkwcpa fkiltyfgsa kerklkrqgw mklnsfhvci ttyrlviqds kmfkrkkwky
661 lildeahlik nwksqrwqtl lnfnskrril ltgtplqndl melwslmhfl mphvfqshqe
721 fkdwfcnpia gmvegqekin kevidrlhnv lrpfllrrlk rdvekqlpsk hehvifcrls
781 krqrnlyedf iastetqatl tsgsffgmis iimqlrkvcn hpdlfegrpi vssfdmagid
841 vqlssticsl llespfskvd lealgflfth ldfsmtsweg deikaistps elikqrvnlk
901 ddleaiplsp knrknlqgtn ifeeirkavf eeriqeskdr aaaiawwnsl rcqrkptyst
961 slrtlltikg plddlkancs symyssilad ivlspierfq kmielveaft faipaarvps
1021 ptcwcsksds pvflspsyke kvtdllspll spirpaivrr qvyfpdrrli qfdcgklqel
1081 amllrklkfg ghraliftqm tkmldvleaf inlygytymr ldgstppeer qtlmqrfntn
1141 pkiflfilst rsggvginlv gadtvifyds dwnpamdqqa qdrchrigqt revhiyrlis
1201 estieenilk kanqkrvldn lviqngeynt effkkldpme lfsghkaltt kdeketskhc
1261 gadiplsnad veaalkqaed eadymalkrv eqeeavdnqe fteepverpe ddelvneddi
1321 kadepadqgl vaagpakeem sllhsdirde ravittssqe ddtdvlddvk qmaaaaadag
1381 qaissfenql rpidryairf lelwdpiive aameneagfe ekeweldhie kykeemeaei
1441 ddgeeplvye kwdadfatea yrqqvevlaq hqlmedlene arereaaeva emvltqnesa
1501 hvlkpkkkkk akkakykslk kgslaaeskh vksvvkieds tdddneefgy vsssdsdmvt
1561 plsrmhmkgk krdlivdtde ektskkkakk hkkslpnsdi kykqtsalld elepskpsds
1621 mvvdnelklt nrgktvgkkf itsmpikrvl mikpeklkkg nlwsrdcvps pdswlpqeda
1681 ilcamvheyg pnwnfvsgtl ygmtaggayr gryrhpaycc eryreliqrh ilsasdsavn
1741 eknlntgsgk allkvteeni rtllnvaaeq pdtemllqkh fscllssiwr tstrtgndqm
1801 lslnspifnr qfmgsvnhtq dlarkpwqgm kvtslsrkll esalqdsgps qpdntisrsr
1861 lqetqpinkl gleltlefpr gnddslnqfp pmislsidgs dslnyvnepp gedvlkgsrv
1921 aaenryrnaa naciedsfgw asntfpandl ksrtgtkaqs lgkhklsasd sakstkskhr
1981 kllaeqlega wvrpndpnlk fdftpgdree eeeqevdeka nsaeiemisc sqwydpffts
2041 glddcslasd iseie
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