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SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]

NCBI Reference Sequence: NP_187887.3

Identical Proteins FASTA Graphics 

LOCUS       NP_187887               2055 aa            linear   PLN 20-OCT-2022
DEFINITION  SNF2 domain-containing protein / helicase domain-containing protein
            [Arabidopsis thaliana].
ACCESSION   NP_187887
VERSION     NP_187887.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_112117.5
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 2055)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (residues 1 to 2055)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 2055)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 2055)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE75248.
            
            On Feb 17, 2004 this sequence version replaced NP_187887.2.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     Protein         1..2055
                     /product="SNF2 domain-containing protein / helicase
                     domain-containing protein"
                     /calculated_mol_wt=233918
     Region          36..106
                     /region_name="HSA"
                     /note="domain in helicases and associated with SANT
                     domains; smart00573"
                     /db_xref="CDD:214727"
     Region          536..758
                     /region_name="DEXQc_SRCAP"
                     /note="DEXH/Q-box helicase domain of SRCAP; cd18003"
                     /db_xref="CDD:350761"
     Region          554..1488
                     /region_name="DISARM_DrmD_b"
                     /note="DISARM system SNF2-like helicase DrmD, short form;
                     NF038318"
                     /db_xref="CDD:468472"
     Site            order(563..569,603,664..665)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350761"
     Region          1064..1199
                     /region_name="SF2_C_SNF"
                     /note="C-terminal helicase domain of the SNF family
                     helicases; cd18793"
                     /db_xref="CDD:350180"
     Site            order(1100..1101,1109,1151,1172..1173)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:350180"
     Site            order(1157..1158,1160,1183,1186)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:350180"
     CDS             1..2055
                     /gene="PIE1"
                     /locus_tag="AT3G12810"
                     /gene_synonym="chr13; PHOTOPERIOD-INDEPENDENT EARLY
                     FLOWERING 1; SRCAP"
                     /coded_by="NM_112117.5:595..6762"
                     /inference="Similar to RNA sequence,
                     EST:INSD:CB518238.1,INSD:EL991129.1,INSD:ES009706.1,
                     INSD:EL205627.1,INSD:EL100947.1,INSD:EL302768.1,
                     INSD:EL327867.1,INSD:ES072235.1,INSD:EG487625.1,
                     INSD:EH961164.1,INSD:EH974221.1,INSD:ES138614.1,
                     INSD:ES125822.1,INSD:EG487623.1,INSD:EL982493.1,
                     INSD:ES008234.1"
                     /inference="Similar to RNA sequence, mRNA:INSD:AY279398.1"
                     /note="PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1);
                     FUNCTIONS IN: helicase activity, DNA binding, ATP binding,
                     nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED
                     IN: SWI/SNF complex, cell wall, chromatin remodeling
                     complex; EXPRESSED IN: 18 plant structures; EXPRESSED
                     DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA
                     (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999),
                     Helicase/SANT-associated, DNA binding
                     (InterPro:IPR014012), SNF2-related (InterPro:IPR000330),
                     MYB-like (InterPro:IPR017877), SANT, DNA-binding
                     (InterPro:IPR001005), DEAD-like helicase, N-terminal
                     (InterPro:IPR014001), DNA/RNA helicase, C-terminal
                     (InterPro:IPR001650), Helicase, superfamily 1/2,
                     ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
                     thaliana protein match is: INO80 ortholog
                     (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins
                     in 2357 species: Archae - 246; Bacteria - 10217; Metazoa -
                     11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other
                     Eukaryotes - 9924 (source: NCBI BLink)."
                     /db_xref="GeneID:820463"
                     /db_xref="TAIR:AT3G12810"
                     /db_xref="Araport:AT3G12810"
ORIGIN      
        1 maskggkskp divmasksgk skpdnesrak rqktleapke prrpkthwdh vleemawlsk
       61 dfeserkwkl aqakkvalra skgmldqasr eerklkeeeq rlrkvalnis kdmkkfwmkv
      121 eklvlykhql vrnekkkkam dkqlefllgq terystmlae nlvepykqgq ntpskpllti
      181 esksdeerae qippeinssa glesgspeld edydlksede teddedtiee dekhftkrer
      241 qeelealqne vdlpveellr rytsgrvsre tspvkdened nltsvsrvts pvkdenqdnl
      301 asvgqdhged knnlaaseet egnpsvrrsn dsyghlaise thshdlepgm ttasvksrke
      361 dhtydfndeq edvdfvlang eekddeatla veeelakadn edhveeiall qkesempiev
      421 llarykedfg gkdisedese ssfavsedsi vdsdenrqqa dldddnvdlt eckldpepcs
      481 envegtfhev aedndkdssd kiadaaaaar saqptgftys ttkvrtklpf llkhslreyq
      541 higldwlvtm yekklngila demglgktim tiallahlac dkgiwgphli vvptsvmlnw
      601 eteflkwcpa fkiltyfgsa kerklkrqgw mklnsfhvci ttyrlviqds kmfkrkkwky
      661 lildeahlik nwksqrwqtl lnfnskrril ltgtplqndl melwslmhfl mphvfqshqe
      721 fkdwfcnpia gmvegqekin kevidrlhnv lrpfllrrlk rdvekqlpsk hehvifcrls
      781 krqrnlyedf iastetqatl tsgsffgmis iimqlrkvcn hpdlfegrpi vssfdmagid
      841 vqlssticsl llespfskvd lealgflfth ldfsmtsweg deikaistps elikqrvnlk
      901 ddleaiplsp knrknlqgtn ifeeirkavf eeriqeskdr aaaiawwnsl rcqrkptyst
      961 slrtlltikg plddlkancs symyssilad ivlspierfq kmielveaft faipaarvps
     1021 ptcwcsksds pvflspsyke kvtdllspll spirpaivrr qvyfpdrrli qfdcgklqel
     1081 amllrklkfg ghraliftqm tkmldvleaf inlygytymr ldgstppeer qtlmqrfntn
     1141 pkiflfilst rsggvginlv gadtvifyds dwnpamdqqa qdrchrigqt revhiyrlis
     1201 estieenilk kanqkrvldn lviqngeynt effkkldpme lfsghkaltt kdeketskhc
     1261 gadiplsnad veaalkqaed eadymalkrv eqeeavdnqe fteepverpe ddelvneddi
     1321 kadepadqgl vaagpakeem sllhsdirde ravittssqe ddtdvlddvk qmaaaaadag
     1381 qaissfenql rpidryairf lelwdpiive aameneagfe ekeweldhie kykeemeaei
     1441 ddgeeplvye kwdadfatea yrqqvevlaq hqlmedlene arereaaeva emvltqnesa
     1501 hvlkpkkkkk akkakykslk kgslaaeskh vksvvkieds tdddneefgy vsssdsdmvt
     1561 plsrmhmkgk krdlivdtde ektskkkakk hkkslpnsdi kykqtsalld elepskpsds
     1621 mvvdnelklt nrgktvgkkf itsmpikrvl mikpeklkkg nlwsrdcvps pdswlpqeda
     1681 ilcamvheyg pnwnfvsgtl ygmtaggayr gryrhpaycc eryreliqrh ilsasdsavn
     1741 eknlntgsgk allkvteeni rtllnvaaeq pdtemllqkh fscllssiwr tstrtgndqm
     1801 lslnspifnr qfmgsvnhtq dlarkpwqgm kvtslsrkll esalqdsgps qpdntisrsr
     1861 lqetqpinkl gleltlefpr gnddslnqfp pmislsidgs dslnyvnepp gedvlkgsrv
     1921 aaenryrnaa naciedsfgw asntfpandl ksrtgtkaqs lgkhklsasd sakstkskhr
     1981 kllaeqlega wvrpndpnlk fdftpgdree eeeqevdeka nsaeiemisc sqwydpffts
     2041 glddcslasd iseie
//
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