LOCUS NP_180826 285 aa linear PLN 20-OCT-2022
DEFINITION vesicle-associated membrane protein 725 [Arabidopsis thaliana].
ACCESSION NP_180826
VERSION NP_180826.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_128826.4
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 285)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (residues 1 to 285)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 285)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 285)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEC08714.
On May 13, 2003 this sequence version replaced NP_180826.1.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..285
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
Protein 1..285
/product="vesicle-associated membrane protein 725"
/calculated_mol_wt=32560
Region 72..186
/region_name="Longin"
/note="longin domain; cd14824"
/db_xref="CDD:341428"
Site order(72,93,96,115,118,120)
/site_type="lipid-binding"
/note="lipid binding site [chemical binding]"
/db_xref="CDD:341428"
Site order(82,85,87,94,98,177,181,184)
/site_type="other"
/note="Sec22 interface [polypeptide binding]"
/db_xref="CDD:341428"
Site order(114,117,137,141)
/site_type="other"
/note="VARP interface [polypeptide binding]"
/db_xref="CDD:341428"
Region 192..>260
/region_name="Synaptobrevin"
/note="pfam00957"
/db_xref="CDD:395764"
CDS 1..285
/gene="VAMP725"
/locus_tag="AT2G32670"
/gene_synonym="ATVAMP725; F24L7.19; F24L7_19;
vesicle-associated membrane protein 725"
/coded_by="NM_128826.4:65..922"
/inference="Similar to RNA sequence,
EST:INSD:AU239178.1,INSD:AU230456.1,INSD:BP822486.1,
INSD:BE527467.1,INSD:BP644355.1,INSD:AV519241.1,
INSD:BP800664.1,INSD:BP800723.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT006042.1,INSD:BX819808.1,INSD:AK118318.1"
/note="vesicle-associated membrane protein 725 (VAMP725);
FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
transport, vesicle-mediated transport; LOCATED IN:
endosome, plasma membrane, membrane; EXPRESSED IN: 17
plant structures; EXPRESSED DURING: 8 growth stages;
CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908),
Longin-like (InterPro:IPR011012), Synaptobrevin
(InterPro:IPR001388); BEST Arabidopsis thaliana protein
match is: vesicle-associated membrane protein 726
(TAIR:AT1G04760.1); Has 2451 Blast hits to 2449 proteins
in 264 species: Archae - 0; Bacteria - 0; Metazoa - 984;
Fungi - 445; Plants - 609; Viruses - 0; Other Eukaryotes -
413 (source: NCBI BLink)."
/db_xref="Araport:AT2G32670"
/db_xref="GeneID:817827"
/db_xref="TAIR:AT2G32670"
ORIGIN
1 mdrsvvpisl apfqfllvfw ifltsvhtnp nkqqktvvsl slwwnsknri rgcvwfffll
61 rvtrtmgqqn liysfvargt vilveytefk gnftavaaqc lqklpssnnk ftyncdghtf
121 nylvengfty cvvavesvgr qipmaflerv kedfnkrygg gkattaqans lnrefgsklk
181 ehmqycvdhp deisklakvk aqvtevkgvm meniekvldr gekiellvdk tenlrsqaqd
241 frtqgtkirr kmwfenmkik livlgiiitl iliiilsvcg gfkct
//