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vacuolar protein sorting 46.1 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_173215.1

Identical Proteins FASTA Graphics 

LOCUS       NP_173215                203 aa            linear   PLN 20-OCT-2022
DEFINITION  vacuolar protein sorting 46.1 [Arabidopsis thaliana].
ACCESSION   NP_173215
VERSION     NP_173215.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_101635.5
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 203)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (residues 1 to 203)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 203)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 203)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (residues 1 to 203)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE29628.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     Protein         1..203
                     /product="vacuolar protein sorting 46.1"
                     /calculated_mol_wt=22632
     Region          11..173
                     /region_name="Snf7"
                     /note="pfam03357"
                     /db_xref="CDD:460896"
     CDS             1..203
                     /gene="VPS46.1"
                     /locus_tag="AT1G17730"
                     /gene_synonym="CHARGED MULTIVESICULAR BODY
                     PROTEIN/CHROMATIN MODIFYING PROTEIN1B; CHARGED
                     MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B;
                     CHMP1B; F11A6.7; F11A6_7; vacuolar protein sorting 46.1"
                     /coded_by="NM_101635.5:172..783"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES151930.1,INSD:DR372510.1,INSD:AV548952.1,
                     INSD:EL167945.1,INSD:ES096165.1,INSD:DR201524.1,
                     INSD:CB256841.1,INSD:EL225149.1,INSD:AI995091.1,
                     INSD:ES213011.1,INSD:DR201522.1,INSD:ES069126.1,
                     INSD:DR201529.1,INSD:EL300948.1,INSD:EH803067.1,
                     INSD:BP856639.1,INSD:EG431676.1,INSD:DR201523.1,
                     INSD:BP796320.1,INSD:BP634040.1,INSD:DR201525.1,
                     INSD:EG438786.1,INSD:AU239211.1,INSD:BP658407.1,
                     INSD:ES170963.1,INSD:EL996143.1,INSD:DR201527.1,
                     INSD:EH970256.1,INSD:BP837505.1,INSD:DR201528.1,
                     INSD:BP634041.1,INSD:BP827038.1,INSD:ES186953.1,
                     INSD:EL037173.1,INSD:EG440820.1,INSD:BP844016.1,
                     INSD:ES086364.1,INSD:ES128180.1,INSD:EG438787.1,
                     INSD:EL149287.1,INSD:DR201521.1,INSD:EH896061.1,
                     INSD:EL217953.1,INSD:DR201526.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AK118350.1,INSD:BX813722.1,INSD:AY085606.1"
                     /note="vacuolar protein sorting 46.1 (VPS46.1); CONTAINS
                     InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST
                     Arabidopsis thaliana protein match is: SNF7 family protein
                     (TAIR:AT1G73030.1); Has 1319 Blast hits to 1319 proteins
                     in 225 species: Archae - 2; Bacteria - 0; Metazoa - 503;
                     Fungi - 283; Plants - 343; Viruses - 0; Other Eukaryotes -
                     188 (source: NCBI BLink)."
                     /db_xref="Araport:AT1G17730"
                     /db_xref="GeneID:838349"
                     /db_xref="TAIR:AT1G17730"
ORIGIN      
        1 mgntdklmnq ifelkftsks lqrqarkcek eerseklkvk kaiekgnmdg ariyaenair
       61 krseqmnylr lssrldavva rldtqakmat itksmtnivk slesslttgn lqkmsetmds
      121 fekqfvnmev qaefmdnama gstslstpeg evnslmqqva ddyglevsvg lpqpaghaip
      181 tkteekveed dltrrlaelk arg
//
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Protein clusters for NP_173215.1

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