LOCUS NP_173215 203 aa linear PLN 20-OCT-2022
DEFINITION vacuolar protein sorting 46.1 [Arabidopsis thaliana].
ACCESSION NP_173215
VERSION NP_173215.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_101635.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 203)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 203)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 203)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 203)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 203)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE29628.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..203
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..203
/product="vacuolar protein sorting 46.1"
/calculated_mol_wt=22632
Region 11..173
/region_name="Snf7"
/note="pfam03357"
/db_xref="CDD:460896"
CDS 1..203
/gene="VPS46.1"
/locus_tag="AT1G17730"
/gene_synonym="CHARGED MULTIVESICULAR BODY
PROTEIN/CHROMATIN MODIFYING PROTEIN1B; CHARGED
MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B;
CHMP1B; F11A6.7; F11A6_7; vacuolar protein sorting 46.1"
/coded_by="NM_101635.5:172..783"
/inference="Similar to RNA sequence,
EST:INSD:ES151930.1,INSD:DR372510.1,INSD:AV548952.1,
INSD:EL167945.1,INSD:ES096165.1,INSD:DR201524.1,
INSD:CB256841.1,INSD:EL225149.1,INSD:AI995091.1,
INSD:ES213011.1,INSD:DR201522.1,INSD:ES069126.1,
INSD:DR201529.1,INSD:EL300948.1,INSD:EH803067.1,
INSD:BP856639.1,INSD:EG431676.1,INSD:DR201523.1,
INSD:BP796320.1,INSD:BP634040.1,INSD:DR201525.1,
INSD:EG438786.1,INSD:AU239211.1,INSD:BP658407.1,
INSD:ES170963.1,INSD:EL996143.1,INSD:DR201527.1,
INSD:EH970256.1,INSD:BP837505.1,INSD:DR201528.1,
INSD:BP634041.1,INSD:BP827038.1,INSD:ES186953.1,
INSD:EL037173.1,INSD:EG440820.1,INSD:BP844016.1,
INSD:ES086364.1,INSD:ES128180.1,INSD:EG438787.1,
INSD:EL149287.1,INSD:DR201521.1,INSD:EH896061.1,
INSD:EL217953.1,INSD:DR201526.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK118350.1,INSD:BX813722.1,INSD:AY085606.1"
/note="vacuolar protein sorting 46.1 (VPS46.1); CONTAINS
InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST
Arabidopsis thaliana protein match is: SNF7 family protein
(TAIR:AT1G73030.1); Has 1319 Blast hits to 1319 proteins
in 225 species: Archae - 2; Bacteria - 0; Metazoa - 503;
Fungi - 283; Plants - 343; Viruses - 0; Other Eukaryotes -
188 (source: NCBI BLink)."
/db_xref="Araport:AT1G17730"
/db_xref="GeneID:838349"
/db_xref="TAIR:AT1G17730"
ORIGIN
1 mgntdklmnq ifelkftsks lqrqarkcek eerseklkvk kaiekgnmdg ariyaenair
61 krseqmnylr lssrldavva rldtqakmat itksmtnivk slesslttgn lqkmsetmds
121 fekqfvnmev qaefmdnama gstslstpeg evnslmqqva ddyglevsvg lpqpaghaip
181 tkteekveed dltrrlaelk arg
//