LOCUS NP_171835 322 aa linear PLN 20-OCT-2022
DEFINITION ribosomal RNA processing 4 [Arabidopsis thaliana].
ACCESSION NP_171835
VERSION NP_171835.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
DBSOURCE REFSEQ: accession NM_100218.5
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 322)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (residues 1 to 322)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (residues 1 to 322)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (residues 1 to 322)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (residues 1 to 322)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
The reference sequence is identical to AEE27563.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..322
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
Protein 1..322
/product="ribosomal RNA processing 4"
/calculated_mol_wt=36443
Region 52..>113
/region_name="PRK09521"
/note="exosome complex RNA-binding protein Csl4;
Provisional"
/db_xref="CDD:236547"
Region 88..179
/region_name="S1_Rrp4"
/note="Rrp4 S1-like RNA-binding domain. S1-like
RNA-binding domains are found in a wide variety of
RNA-associated proteins. Rrp4 protein is a subunit of the
exosome complex. The exosome plays a central role in 3' to
5' RNA processing and degradation in...; cd05789"
/db_xref="CDD:240215"
Site order(88,100,102,116)
/site_type="other"
/note="subunit interface [polypeptide binding]"
/db_xref="CDD:240215"
Site order(102,110,120,122)
/site_type="other"
/note="RNA binding site [nucleotide binding]"
/db_xref="CDD:240215"
Region 182..313
/region_name="KH-I_Rrp4_eukar"
/note="type I K homology (KH) RNA-binding domain found in
exosome complex component Rrp4 from eukaryote; cd22525"
/db_xref="CDD:411953"
Site order(182,191,194,196..197,199,218,254,257,260..261,
264..265,273..274,296..297,313)
/site_type="other"
/note="oligomer interface [polypeptide binding]"
/db_xref="CDD:411953"
CDS 1..322
/gene="RRP4"
/locus_tag="AT1G03360"
/gene_synonym="ATRRP4; F15K9.4; F15K9_4; ribosomal RNA
processing 4"
/coded_by="NM_100218.5:137..1105"
/inference="Similar to RNA sequence,
EST:INSD:DR355712.1,INSD:DR355714.1,INSD:EG523983.1,
INSD:EH961030.1,INSD:BP799653.1,INSD:EH797108.1,
INSD:DR350511.1,INSD:BU635779.1,INSD:ES188950.1,
INSD:EL009652.1,INSD:ES054633.1,INSD:ES134798.1,
INSD:DR355713.1,INSD:DR355715.1,INSD:ES127673.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT010533.1,INSD:AK176232.1"
/note="ribosomal RNA processing 4 (RRP4); FUNCTIONS IN:
exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED
IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to
615 proteins in 291 species: Archae - 147; Bacteria - 0;
Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0;
Other Eukaryotes - 143 (source: NCBI BLink)."
/db_xref="Araport:AT1G03360"
/db_xref="GeneID:839521"
/db_xref="TAIR:AT1G03360"
ORIGIN
1 mvmrklqlpl sqtqkvrfer aierlqslss sansdasviv tdsipvnhdd aflkghgtse
61 vdgellatvc gvvervdklv yvrtlraryk pevgdivvgr vievaqkrwr velnfnqdgv
121 lmlssmnmpd giqrrrtsvd elnmrnifve hdvvcaevrn fqhdgslqlq arsqkygkle
181 kgqllkvdpy lvkrskhhfh yveslgidli igcngfiwvg ehvevrdpma iddqkdeemi
241 sssstgkeqs hipletrqti crignairvl snlgftvtle vimetvnlsn sknidihdml
301 gsefhvvvae neaerrrtkr kk
//