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ribosomal RNA processing 4 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_171835.1

Identical Proteins FASTA Graphics 

LOCUS       NP_171835                322 aa            linear   PLN 20-OCT-2022
DEFINITION  ribosomal RNA processing 4 [Arabidopsis thaliana].
ACCESSION   NP_171835
VERSION     NP_171835.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_100218.5
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 322)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (residues 1 to 322)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 322)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 322)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (residues 1 to 322)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE27563.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..322
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     Protein         1..322
                     /product="ribosomal RNA processing 4"
                     /calculated_mol_wt=36443
     Region          52..>113
                     /region_name="PRK09521"
                     /note="exosome complex RNA-binding protein Csl4;
                     Provisional"
                     /db_xref="CDD:236547"
     Region          88..179
                     /region_name="S1_Rrp4"
                     /note="Rrp4 S1-like RNA-binding domain. S1-like
                     RNA-binding domains are found in a wide variety of
                     RNA-associated proteins. Rrp4 protein is a subunit of the
                     exosome complex. The exosome plays a central role in 3' to
                     5' RNA processing and degradation in...; cd05789"
                     /db_xref="CDD:240215"
     Site            order(88,100,102,116)
                     /site_type="other"
                     /note="subunit interface [polypeptide binding]"
                     /db_xref="CDD:240215"
     Site            order(102,110,120,122)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:240215"
     Region          182..313
                     /region_name="KH-I_Rrp4_eukar"
                     /note="type I K homology (KH) RNA-binding domain found in
                     exosome complex component Rrp4 from eukaryote; cd22525"
                     /db_xref="CDD:411953"
     Site            order(182,191,194,196..197,199,218,254,257,260..261,
                     264..265,273..274,296..297,313)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:411953"
     CDS             1..322
                     /gene="RRP4"
                     /locus_tag="AT1G03360"
                     /gene_synonym="ATRRP4; F15K9.4; F15K9_4; ribosomal RNA
                     processing 4"
                     /coded_by="NM_100218.5:137..1105"
                     /inference="Similar to RNA sequence,
                     EST:INSD:DR355712.1,INSD:DR355714.1,INSD:EG523983.1,
                     INSD:EH961030.1,INSD:BP799653.1,INSD:EH797108.1,
                     INSD:DR350511.1,INSD:BU635779.1,INSD:ES188950.1,
                     INSD:EL009652.1,INSD:ES054633.1,INSD:ES134798.1,
                     INSD:DR355713.1,INSD:DR355715.1,INSD:ES127673.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT010533.1,INSD:AK176232.1"
                     /note="ribosomal RNA processing 4 (RRP4); FUNCTIONS IN:
                     exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED
                     IN: 20 plant structures; EXPRESSED DURING: 13 growth
                     stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
                     OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to
                     615 proteins in 291 species: Archae - 147; Bacteria - 0;
                     Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0;
                     Other Eukaryotes - 143 (source: NCBI BLink)."
                     /db_xref="Araport:AT1G03360"
                     /db_xref="GeneID:839521"
                     /db_xref="TAIR:AT1G03360"
ORIGIN      
        1 mvmrklqlpl sqtqkvrfer aierlqslss sansdasviv tdsipvnhdd aflkghgtse
       61 vdgellatvc gvvervdklv yvrtlraryk pevgdivvgr vievaqkrwr velnfnqdgv
      121 lmlssmnmpd giqrrrtsvd elnmrnifve hdvvcaevrn fqhdgslqlq arsqkygkle
      181 kgqllkvdpy lvkrskhhfh yveslgidli igcngfiwvg ehvevrdpma iddqkdeemi
      241 sssstgkeqs hipletrqti crignairvl snlgftvtle vimetvnlsn sknidihdml
      301 gsefhvvvae neaerrrtkr kk
//
Feature
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Protein clusters for NP_171835.1

  • ATRRP4
    Total proteins: 2
    Total genera: 0
    Conserved in: Arabidopsis

More about the RRP4 gene

  • RRP4 gene
    Also Known As: AT1G03360, ATRRP4, F15K...

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