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TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 [Arabidopsis thaliana]

NCBI Reference Sequence: NP_001078407.1

Identical Proteins FASTA Graphics 

LOCUS       NP_001078407             365 aa            linear   PLN 20-OCT-2022
DEFINITION  TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
            [Arabidopsis thaliana].
ACCESSION   NP_001078407
VERSION     NP_001078407.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
DBSOURCE    REFSEQ: accession NM_001084938.1
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 365)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (residues 1 to 365)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 365)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (residues 1 to 365)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            The reference sequence is identical to AEE84040.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     Protein         1..365
                     /product="TEOSINTE BRANCHED 1, cycloidea and PCF
                     transcription factor 2"
                     /calculated_mol_wt=40048
     Region          18..365
                     /region_name="TCP2"
                     /note="Protein TCP2; Provisional; PLN03106"
                     /db_xref="CDD:215579"
     CDS             1..365
                     /gene="TCP2"
                     /locus_tag="AT4G18390"
                     /gene_synonym="cycloidea and PCF transcription factor 2;
                     F28J12.50; F28J12_50; TEOSINTE BRANCHED 1"
                     /coded_by="NM_001084938.1:239..1336"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES152922.1,INSD:EL303144.1,INSD:EH877229.1,
                     INSD:EL997596.1,INSD:ES092138.1,INSD:EL268948.1,
                     INSD:EL304012.1,INSD:EH937098.1,INSD:AI994542.1,
                     INSD:DR751293.1,INSD:BX835939.1,INSD:DR379749.1,
                     INSD:AV797759.1,INSD:ES137267.1,INSD:BX835543.1,
                     INSD:AV797703.1,INSD:EL981531.1,INSD:DR272271.1,
                     INSD:EG496325.1,INSD:EL089051.1,INSD:EG496335.1,
                     INSD:ES168771.1,INSD:CK118227.1,INSD:EL299600.1,
                     INSD:EL073769.1,INSD:ES147829.1,INSD:DR335294.1,
                     INSD:EL337077.1,INSD:AV795100.1,INSD:AV801172.1,
                     INSD:ES019205.1,INSD:R29994.1,INSD:EL006458.1,
                     INSD:ES197761.1,INSD:DR272272.1,INSD:BP793837.1,
                     INSD:EH910924.1,INSD:ES206493.1,INSD:EG496322.1,
                     INSD:AI100690.1,INSD:AV518740.1,INSD:BP780319.1,
                     INSD:EG496334.1,INSD:DR272269.1,INSD:EG496321.1,
                     INSD:EH912343.1,INSD:ES170559.1,INSD:R30409.1,
                     INSD:DR751294.1,INSD:ES022758.1,INSD:DR371657.1,
                     INSD:EL031557.1,INSD:EH857587.1,INSD:BP783337.1,
                     INSD:DR210095.1,INSD:EL135051.1,INSD:EH843511.1,
                     INSD:EG496326.1,INSD:EL177810.1,INSD:AV800155.1,
                     INSD:T42571.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AF072691.1,INSD:AY102141.1,INSD:AY084306.1"
                     /note="''TEOSINTE BRANCHED 1, cycloidea and PCF
                     transcription factor 2'' (TCP2); FUNCTIONS IN:
                     sequence-specific DNA binding transcription factor
                     activity; INVOLVED IN: cell differentiation, positive
                     regulation of development, heterochronic, regulation of
                     transcription, leaf morphogenesis; LOCATED IN:
                     cellular_component unknown; EXPRESSED IN: 22 plant
                     structures; EXPRESSED DURING: 13 growth stages; CONTAINS
                     InterPro DOMAIN/s: Transcription factor, TCP
                     (InterPro:IPR005333), CYC/TB1, R domain
                     (InterPro:IPR017888), Transcription factor TCP subgroup
                     (InterPro:IPR017887); BEST Arabidopsis thaliana protein
                     match is: TEOSINTE BRANCHED 1, cycloidea, and PCF family
                     24 (TAIR:AT1G30210.2); Has 2182 Blast hits to 1888
                     proteins in 369 species: Archae - 0; Bacteria - 6; Metazoa
                     - 128; Fungi - 15; Plants - 1699; Viruses - 0; Other
                     Eukaryotes - 334 (source: NCBI BLink)."
                     /db_xref="GeneID:827568"
                     /db_xref="TAIR:AT4G18390"
                     /db_xref="Araport:AT4G18390"
ORIGIN      
        1 migdlmknnn ngdvvdnevn nrlsrwhhns sriirvsras ggkdrhskvl tskgprdrrv
       61 rlsvstalqf ydlqdrlgyd qpskavewli kaaedsisel pslnnthfpt ddenhqnqtl
      121 ttvaanslsk sacssnsdts knssglslsr selrdkarer arertaketk erdhnhtsft
      181 dllnsgsdpv nsnrqwmasa pssspmeyfs sglilgsgqq thfpistnsh pfssisdhhh
      241 hhphhqhqef sfvpdhlisp aesnggafnl dfnmstpsga gaavsaasgg gfsgfnrgtl
      301 qsnstnqhqs flanlqrfpt sesgggpqfl fgalpaenhh hnhqfqlyye ngcrnssehk
      361 gkgkn
//
Feature
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Protein clusters for NP_001078407.1

Reference sequence information

More about the TCP2 gene

  • TCP2 gene
    Also Known As: AT4G18390, F28J12.50, F...

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