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cyclic di-GMP phosphodiesterase YahA [Escherichia coli]

GenBank: KLX56889.1

Identical Proteins FASTA Graphics 

LOCUS       KLX56889                 362 aa            linear   BCT 19-JUN-2015
DEFINITION  cyclic di-GMP phosphodiesterase YahA [Escherichia coli].
ACCESSION   KLX56889
VERSION     KLX56889.1
DBLINK      BioProject: PRJNA271899
            BioSample: SAMN03280208
DBSOURCE    accession LEUE01000001.1
KEYWORDS    .
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE   1  (residues 1 to 362)
  AUTHORS   Earl,A.M., Onderdonk,A.B., Kirby,J., Ferraro,M.J., Huang,S.,
            Spencer,M., Fodor,A., Hooper,D., Dekker,J., O'Brien,T., Quan,V.,
            Gombosev,A., Delaney,M., DuBois,A., Ernst,C., Kim,D.S., Rossman,W.,
            Gohs,F., Petruso,H., Nozar,T., Mougeot,F., Manson-McGuire,A.,
            Young,S., Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A.,
            Priest,M., Shea,T., Wortman,I., Wortman,J.R., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of None
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 362)
  AUTHORS   Earl,A.M., Onderdonk,A.B., Kirby,J., Ferraro,M.J., Huang,S.,
            Spencer,M., Fodor,A., Hooper,D., Dekker,J., O'Brien,T., Quan,V.,
            Gombosev,A., Delaney,M., DuBois,A., Ernst,C., Kim,D.S., Rossman,W.,
            Gohs,F., Petruso,H., Nozar,T., Mougeot,F., Manson-McGuire,A.,
            Young,S., Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A.,
            Priest,M., Shea,T., Wortman,I., Wortman,J.R., Nusbaum,C. and
            Birren,B.
  CONSRTM   The Broad Institute Genomics Platform, The Broad Institute Genome
            Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (10-JUN-2015) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R48559
            Assembly Name         :: Esch_coli_BIDMC98_V1
            Genome Coverage       :: 139.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Escherichia coli"
                     /strain="BIDMC98"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /collection_date="2014"
     Protein         1..362
                     /product="cyclic di-GMP phosphodiesterase YahA"
     Region          26..80
                     /region_name="LuxR_C_like"
                     /note="C-terminal DNA-binding domain of LuxR-like
                     proteins. This domain contains a helix-turn-helix motif
                     and binds DNA. Proteins belonging to this group are
                     response regulators; some act as transcriptional
                     activators, others as transcriptional repressors. Many...;
                     cd06170"
                     /db_xref="CDD:99777"
     Site            order(26..28,41..43,51..52,54..55,57..61,72)
                     /site_type="DNA binding"
                     /note="DNA binding residues [nucleotide binding]"
                     /db_xref="CDD:99777"
     Site            order(37,39,41,72..74,77,80)
                     /site_type="other"
                     /note="dimerization interface [polypeptide binding]"
                     /db_xref="CDD:99777"
     Region          110..350
                     /region_name="EAL"
                     /note="Putative diguanylate phosphodiesterase; smart00052"
                     /db_xref="CDD:214491"
     CDS             1..362
                     /locus_tag="SK77_00318"
                     /coded_by="LEUE01000001.1:352641..353729"
                     /transl_table=11
ORIGIN      
        1 mnscdfrvfl qefgttvhls lpgsvseker lllkllmqgm svteisqyrn rsaktishqk
       61 kqlfeklgiq sditfwrdif fqynpeiisa tgsnshryin dnhyhhivtp eaislalenh
      121 efkpwiqpvf caqtgvltgc evlvrwehpq tgiippdqfi plaessgliv imtrqlmkqt
      181 adilmpvkhl lpdnfhigin vsagcflaag fekeclnlvn klgndkiklv lelternpip
      241 vtpearaifd slhqhnitfa lddfgtgyat yrylqafpvd fikidksfvq masvdeisgh
      301 ivdnivelar kpglsivaeg vetqeqadlm igkgvhflqg ylysppvpgn kfisewvmka
      361 gg
//
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