LOCUS KLX56889 362 aa linear BCT 19-JUN-2015
DEFINITION cyclic di-GMP phosphodiesterase YahA [Escherichia coli].
ACCESSION KLX56889
VERSION KLX56889.1
DBLINK BioProject: PRJNA271899
BioSample: SAMN03280208
DBSOURCE accession LEUE01000001.1
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Enterobacterales; Enterobacteriaceae; Escherichia.
REFERENCE 1 (residues 1 to 362)
AUTHORS Earl,A.M., Onderdonk,A.B., Kirby,J., Ferraro,M.J., Huang,S.,
Spencer,M., Fodor,A., Hooper,D., Dekker,J., O'Brien,T., Quan,V.,
Gombosev,A., Delaney,M., DuBois,A., Ernst,C., Kim,D.S., Rossman,W.,
Gohs,F., Petruso,H., Nozar,T., Mougeot,F., Manson-McGuire,A.,
Young,S., Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A.,
Priest,M., Shea,T., Wortman,I., Wortman,J.R., Nusbaum,C. and
Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE The Genome Sequence of None
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 362)
AUTHORS Earl,A.M., Onderdonk,A.B., Kirby,J., Ferraro,M.J., Huang,S.,
Spencer,M., Fodor,A., Hooper,D., Dekker,J., O'Brien,T., Quan,V.,
Gombosev,A., Delaney,M., DuBois,A., Ernst,C., Kim,D.S., Rossman,W.,
Gohs,F., Petruso,H., Nozar,T., Mougeot,F., Manson-McGuire,A.,
Young,S., Abouelleil,A., Cao,P., Chapman,S.B., Griggs,A.,
Priest,M., Shea,T., Wortman,I., Wortman,J.R., Nusbaum,C. and
Birren,B.
CONSRTM The Broad Institute Genomics Platform, The Broad Institute Genome
Sequencing Center for Infectious Disease
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2015) Broad Institute of MIT and Harvard, 7
Cambridge Center, Cambridge, MA 02142, USA
COMMENT Please be aware that the annotation is done automatically with
little or no manual curation.
##Genome-Assembly-Data-START##
Assembly Method :: allpaths v. R48559
Assembly Name :: Esch_coli_BIDMC98_V1
Genome Coverage :: 139.0x
Sequencing Technology :: Illumina
##Genome-Assembly-Data-END##
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..362
/organism="Escherichia coli"
/strain="BIDMC98"
/host="Homo sapiens"
/db_xref="taxon:562"
/collection_date="2014"
Protein 1..362
/product="cyclic di-GMP phosphodiesterase YahA"
Region 26..80
/region_name="LuxR_C_like"
/note="C-terminal DNA-binding domain of LuxR-like
proteins. This domain contains a helix-turn-helix motif
and binds DNA. Proteins belonging to this group are
response regulators; some act as transcriptional
activators, others as transcriptional repressors. Many...;
cd06170"
/db_xref="CDD:99777"
Site order(26..28,41..43,51..52,54..55,57..61,72)
/site_type="DNA binding"
/note="DNA binding residues [nucleotide binding]"
/db_xref="CDD:99777"
Site order(37,39,41,72..74,77,80)
/site_type="other"
/note="dimerization interface [polypeptide binding]"
/db_xref="CDD:99777"
Region 110..350
/region_name="EAL"
/note="Putative diguanylate phosphodiesterase; smart00052"
/db_xref="CDD:214491"
CDS 1..362
/locus_tag="SK77_00318"
/coded_by="LEUE01000001.1:352641..353729"
/transl_table=11
ORIGIN
1 mnscdfrvfl qefgttvhls lpgsvseker lllkllmqgm svteisqyrn rsaktishqk
61 kqlfeklgiq sditfwrdif fqynpeiisa tgsnshryin dnhyhhivtp eaislalenh
121 efkpwiqpvf caqtgvltgc evlvrwehpq tgiippdqfi plaessgliv imtrqlmkqt
181 adilmpvkhl lpdnfhigin vsagcflaag fekeclnlvn klgndkiklv lelternpip
241 vtpearaifd slhqhnitfa lddfgtgyat yrylqafpvd fikidksfvq masvdeisgh
301 ivdnivelar kpglsivaeg vetqeqadlm igkgvhflqg ylysppvpgn kfisewvmka
361 gg
//