LOCUS KAB5562593 519 aa linear VRT 15-OCT-2019
DEFINITION hypothetical protein PHYPO_G00019690 [Pangasianodon hypophthalmus].
ACCESSION KAB5562593
VERSION KAB5562593.1
DBLINK BioProject: PRJNA547555
BioSample: SAMN11969507
DBSOURCE accession VFJC01000011.1
KEYWORDS .
SOURCE Pangasianodon hypophthalmus (striped catfish)
ORGANISM Pangasianodon hypophthalmus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
Pangasiidae; Pangasianodon.
REFERENCE 1 (residues 1 to 519)
AUTHORS Wen,M., Zahm,M., Roques,C., Cabau,C., Klopp,C., Donnadieu,C.,
Jouanno,E., Avarre,J.-C., Campet,M., Ha,T.T.T., Dugue,R.,
Lampietro,C., Louis,A., Herpin,A., Echchiki,A., Berthelot,C.,
Parey,E., Roest-Crollius,H., Braasch,I., Postlethwait,J., Bobe,J.,
Montfort,J., Bouchez,O., Begum,T., Schartl,M. and Guiguen,Y.
TITLE A chromosome-scale genome assembly of the striped catfish,
Pangasianodon hypophthalmus
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 519)
AUTHORS Wen,M., Zahm,M., Roques,C., Cabau,C., Klopp,C., Donnadieu,C.,
Jouanno,E., Avarre,J.-C., Campet,M., Ha,T.T.T., Dugue,R.,
Lampietro,C., Louis,A., Herpin,A., Echchiki,A., Berthelot,C.,
Parey,E., Roest-Crollius,H., Braasch,I., Postlethwait,J., Bobe,J.,
Montfort,J., Bouchez,O., Begum,T., Schartl,M. and Guiguen,Y.
TITLE Direct Submission
JOURNAL Submitted (06-JUN-2019) PHASE, INRA (Fish Physiology and Genomics
Laboratory), Campus de Beaulieu, Rennes 35042, France
COMMENT ##Genome-Assembly-Data-START##
Assembly Date :: APR-2019
Assembly Method :: SmartDeNovo v. MAY-2017; Juicer v. 1.5.6;
3D-DNA v. 180114
Assembly Name :: GENO_Phyp_1.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 147.0x
Sequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION
##Genome-Assembly-Data-END##
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..519
/organism="Pangasianodon hypophthalmus"
/strain="Indonesia"
/db_xref="taxon:310915"
/chromosome="10"
/sex="male"
/tissue_type="blood"
/dev_stage="adult"
/collection_date="Oct-2017"
/collected_by="Remi Dugue, Institut de recherche pour le
developpement, Institut des Sciences de l'Evolution de
Montpellier, Universite de Montpellier, 34095 Montpellier
cedex 5, France"
Protein 1..519
/product="hypothetical protein"
Region 67..122
/region_name="SH3_Fyn_Yrk"
/note="Src homology 3 domain of Fyn and Yrk Protein
Tyrosine Kinases; cd12006"
/db_xref="CDD:212939"
Site order(73,75,78..79,82,98..101,114,116,118..119)
/site_type="other"
/note="peptide ligand binding site [polypeptide binding]"
/db_xref="CDD:212939"
Site order(75,78..82,98,101,114)
/site_type="other"
/note="SAP interaction site [polypeptide binding]"
/db_xref="CDD:212939"
Region 127..227
/region_name="SH2_Src_Fyn_isoform_a_like"
/note="Src homology 2 (SH2) domain found in Fyn isoform a
like proteins; cd10418"
/db_xref="CDD:198281"
Site order(138,158,160..163,168,184,186,219)
/site_type="other"
/note="autoinhibitory site [polypeptide binding]"
/db_xref="CDD:198281"
Site order(138,158,184,186)
/site_type="other"
/note="phosphotyrosine binding pocket [polypeptide
binding]"
/db_xref="CDD:198281"
Site order(185,213)
/site_type="other"
/note="hydrophobic binding pocket [polypeptide binding]"
/db_xref="CDD:198281"
Region 243..516
/region_name="PTKc_Fyn"
/note="Catalytic domain of the Protein Tyrosine Kinase,
Fyn; cd05070"
/db_xref="CDD:270655"
Site order(259,261..263,267,279,281,324..327,331,372,376..377,
379,390,407..411,420,454)
/site_type="active"
/db_xref="CDD:270655"
Site order(259,262,267,279,281,324..327,331,372,374,377,379,
390)
/site_type="other"
/note="ATP binding site [chemical binding]"
/db_xref="CDD:270655"
Site order(273,275,307,310,312,325,351,355,383,503)
/site_type="other"
/note="SH3/SH2 domain interface [polypeptide binding]"
/db_xref="CDD:270655"
Site order(361,364..365,428,490..492,494,496..497,500,504,
507..508,512)
/site_type="other"
/note="CSK binding interface [polypeptide binding]"
/db_xref="CDD:270655"
Site order(372,376,407..411,420,454)
/site_type="other"
/note="polypeptide substrate binding site [polypeptide
binding]"
/db_xref="CDD:270655"
Site 389..413
/site_type="other"
/note="activation loop (A-loop)"
/db_xref="CDD:270655"
CDS 1..519
/locus_tag="PHYPO_G00019690"
/coded_by="complement(join(VFJC01000011.1:25558853..255590
61,VFJC01000011.1:25559313..25559444,
VFJC01000011.1:25561252..25561405,
VFJC01000011.1:25561510..25561586,
VFJC01000011.1:25562566..25562745,
VFJC01000011.1:25563001..25563165,
VFJC01000011.1:25563332..25563481,
VFJC01000011.1:25565056..25565159,
VFJC01000011.1:25565476..25565574,
VFJC01000011.1:25566236..25566332,
VFJC01000011.1:25567088..25567215,
VFJC01000011.1:25567322..25567347,
VFJC01000011.1:25569264..25569302))"
ORIGIN
1 mqilgcgapv laanldnglc tifgvtaipn ynnfhapvsq gtvtvfggvn ssshsgtlrs
61 rggtgvtlfv alydyearte ddlsfrkgek fqilnstegd wwearslttg gtgyipsnyv
121 apvdsiqaed wyfgklgrkd aerqllsngn prgtflires ettkgaysls iqdwddvkgd
181 hvkhykirkl dnggyyittr aqfetlqqlv hhysaraagl ccrlivpchk gmprladlsv
241 ktkdvweipr eslqlikrlg ngqfgevwmg twngttkvav ktlkpgtmsp esfleeaqim
301 kklrhdklvq lyavvseepi yivteymgkg slldflkdge grslklpnlv dmaaqvaagm
361 ayiermnyih rdlrsanilv gdslvckiad fglarliedn eytarqgakf pikwtapeaa
421 lygrftiksd vwsfgillte lvtkgrvpyp gmnnrevleq vergyrmpcp qdcpislhel
481 mlqcwkrdpe erptfeylqa fledyftate pqyqpgdnl
//