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hypothetical protein PHYPO_G00019690 [Pangasianodon hypophthalmus]

GenBank: KAB5562593.1

Identical Proteins FASTA Graphics 

LOCUS       KAB5562593               519 aa            linear   VRT 15-OCT-2019
DEFINITION  hypothetical protein PHYPO_G00019690 [Pangasianodon hypophthalmus].
ACCESSION   KAB5562593
VERSION     KAB5562593.1
DBLINK      BioProject: PRJNA547555
            BioSample: SAMN11969507
DBSOURCE    accession VFJC01000011.1
KEYWORDS    .
SOURCE      Pangasianodon hypophthalmus (striped catfish)
  ORGANISM  Pangasianodon hypophthalmus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Pangasiidae; Pangasianodon.
REFERENCE   1  (residues 1 to 519)
  AUTHORS   Wen,M., Zahm,M., Roques,C., Cabau,C., Klopp,C., Donnadieu,C.,
            Jouanno,E., Avarre,J.-C., Campet,M., Ha,T.T.T., Dugue,R.,
            Lampietro,C., Louis,A., Herpin,A., Echchiki,A., Berthelot,C.,
            Parey,E., Roest-Crollius,H., Braasch,I., Postlethwait,J., Bobe,J.,
            Montfort,J., Bouchez,O., Begum,T., Schartl,M. and Guiguen,Y.
  TITLE     A chromosome-scale genome assembly of the striped catfish,
            Pangasianodon hypophthalmus
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 519)
  AUTHORS   Wen,M., Zahm,M., Roques,C., Cabau,C., Klopp,C., Donnadieu,C.,
            Jouanno,E., Avarre,J.-C., Campet,M., Ha,T.T.T., Dugue,R.,
            Lampietro,C., Louis,A., Herpin,A., Echchiki,A., Berthelot,C.,
            Parey,E., Roest-Crollius,H., Braasch,I., Postlethwait,J., Bobe,J.,
            Montfort,J., Bouchez,O., Begum,T., Schartl,M. and Guiguen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) PHASE, INRA (Fish Physiology and Genomics
            Laboratory), Campus de Beaulieu, Rennes 35042, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date          :: APR-2019
            Assembly Method        :: SmartDeNovo v. MAY-2017; Juicer v. 1.5.6;
                                      3D-DNA v. 180114
            Assembly Name          :: GENO_Phyp_1.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 147.0x
            Sequencing Technology  :: Illumina HiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Pangasianodon hypophthalmus"
                     /strain="Indonesia"
                     /db_xref="taxon:310915"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /collection_date="Oct-2017"
                     /collected_by="Remi Dugue, Institut de recherche pour le
                     developpement, Institut des Sciences de l'Evolution de
                     Montpellier, Universite de Montpellier, 34095 Montpellier
                     cedex 5, France"
     Protein         1..519
                     /product="hypothetical protein"
     Region          67..122
                     /region_name="SH3_Fyn_Yrk"
                     /note="Src homology 3 domain of Fyn and Yrk Protein
                     Tyrosine Kinases; cd12006"
                     /db_xref="CDD:212939"
     Site            order(73,75,78..79,82,98..101,114,116,118..119)
                     /site_type="other"
                     /note="peptide ligand binding site [polypeptide binding]"
                     /db_xref="CDD:212939"
     Site            order(75,78..82,98,101,114)
                     /site_type="other"
                     /note="SAP interaction site [polypeptide binding]"
                     /db_xref="CDD:212939"
     Region          127..227
                     /region_name="SH2_Src_Fyn_isoform_a_like"
                     /note="Src homology 2 (SH2) domain found in Fyn isoform a
                     like proteins; cd10418"
                     /db_xref="CDD:198281"
     Site            order(138,158,160..163,168,184,186,219)
                     /site_type="other"
                     /note="autoinhibitory site [polypeptide binding]"
                     /db_xref="CDD:198281"
     Site            order(138,158,184,186)
                     /site_type="other"
                     /note="phosphotyrosine binding pocket [polypeptide
                     binding]"
                     /db_xref="CDD:198281"
     Site            order(185,213)
                     /site_type="other"
                     /note="hydrophobic binding pocket [polypeptide binding]"
                     /db_xref="CDD:198281"
     Region          243..516
                     /region_name="PTKc_Fyn"
                     /note="Catalytic domain of the Protein Tyrosine Kinase,
                     Fyn; cd05070"
                     /db_xref="CDD:270655"
     Site            order(259,261..263,267,279,281,324..327,331,372,376..377,
                     379,390,407..411,420,454)
                     /site_type="active"
                     /db_xref="CDD:270655"
     Site            order(259,262,267,279,281,324..327,331,372,374,377,379,
                     390)
                     /site_type="other"
                     /note="ATP binding site [chemical binding]"
                     /db_xref="CDD:270655"
     Site            order(273,275,307,310,312,325,351,355,383,503)
                     /site_type="other"
                     /note="SH3/SH2 domain interface [polypeptide binding]"
                     /db_xref="CDD:270655"
     Site            order(361,364..365,428,490..492,494,496..497,500,504,
                     507..508,512)
                     /site_type="other"
                     /note="CSK binding interface [polypeptide binding]"
                     /db_xref="CDD:270655"
     Site            order(372,376,407..411,420,454)
                     /site_type="other"
                     /note="polypeptide substrate binding site [polypeptide
                     binding]"
                     /db_xref="CDD:270655"
     Site            389..413
                     /site_type="other"
                     /note="activation loop (A-loop)"
                     /db_xref="CDD:270655"
     CDS             1..519
                     /locus_tag="PHYPO_G00019690"
                     /coded_by="complement(join(VFJC01000011.1:25558853..255590
                     61,VFJC01000011.1:25559313..25559444,
                     VFJC01000011.1:25561252..25561405,
                     VFJC01000011.1:25561510..25561586,
                     VFJC01000011.1:25562566..25562745,
                     VFJC01000011.1:25563001..25563165,
                     VFJC01000011.1:25563332..25563481,
                     VFJC01000011.1:25565056..25565159,
                     VFJC01000011.1:25565476..25565574,
                     VFJC01000011.1:25566236..25566332,
                     VFJC01000011.1:25567088..25567215,
                     VFJC01000011.1:25567322..25567347,
                     VFJC01000011.1:25569264..25569302))"
ORIGIN      
        1 mqilgcgapv laanldnglc tifgvtaipn ynnfhapvsq gtvtvfggvn ssshsgtlrs
       61 rggtgvtlfv alydyearte ddlsfrkgek fqilnstegd wwearslttg gtgyipsnyv
      121 apvdsiqaed wyfgklgrkd aerqllsngn prgtflires ettkgaysls iqdwddvkgd
      181 hvkhykirkl dnggyyittr aqfetlqqlv hhysaraagl ccrlivpchk gmprladlsv
      241 ktkdvweipr eslqlikrlg ngqfgevwmg twngttkvav ktlkpgtmsp esfleeaqim
      301 kklrhdklvq lyavvseepi yivteymgkg slldflkdge grslklpnlv dmaaqvaagm
      361 ayiermnyih rdlrsanilv gdslvckiad fglarliedn eytarqgakf pikwtapeaa
      421 lygrftiksd vwsfgillte lvtkgrvpyp gmnnrevleq vergyrmpcp qdcpislhel
      481 mlqcwkrdpe erptfeylqa fledyftate pqyqpgdnl
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for tyrosine-protein kinase fyna (XP_026781811.2).

More about the gene fyna

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