LOCUS KAB4877931 391 aa linear BCT 13-OCT-2019
DEFINITION phosphoribosylaminoimidazolecarboxamide formyltransferase
[Bacteroides thetaiotaomicron].
ACCESSION KAB4877931
VERSION KAB4877931.1
DBLINK BioProject: PRJNA544527
BioSample: SAMN11943910
DBSOURCE accession WCOR01000034.1
KEYWORDS .
SOURCE Bacteroides thetaiotaomicron
ORGANISM Bacteroides thetaiotaomicron
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
Bacteroidaceae; Bacteroides.
REFERENCE 1 (residues 1 to 391)
AUTHORS Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
Pierce,K.A., Xavier,R.J. and Alm,E.J.
TITLE A library of human gut bacterial isolates paired with longitudinal
multiomics data enables mechanistic microbiome research
JOURNAL Nat. Med. 25 (9), 1442-1452 (2019)
PUBMED 31477907
REFERENCE 2 (residues 1 to 391)
AUTHORS Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
TITLE Direct Submission
JOURNAL Submitted (02-OCT-2019) Biological Engineering, Massachusetts
Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
02139, USA
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: SPAdes v. 3.9.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 152.628x
Sequencing Technology :: Illumina NextSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 10/09/2019 01:37:01
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.9
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 5,243
CDSs (total) :: 5,175
Genes (coding) :: 5,047
CDSs (with protein) :: 5,047
Genes (RNA) :: 68
rRNAs :: 3, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 2, 1, 1 (5S, 16S, 23S)
partial rRNAs :: 1 (5S)
tRNAs :: 61
ncRNAs :: 2
Pseudo Genes (total) :: 128
CDSs (without protein) :: 128
Pseudo Genes (ambiguous residues) :: 0 of 128
Pseudo Genes (frameshifted) :: 36 of 128
Pseudo Genes (incomplete) :: 78 of 128
Pseudo Genes (internal stop) :: 37 of 128
Pseudo Genes (multiple problems) :: 20 of 128
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..391
/organism="Bacteroides thetaiotaomicron"
/strain="BIOML-A76"
/isolation_source="fecal material [ENVO:00002003]"
/host="Homo sapiens"
/db_xref="taxon:818"
/geo_loc_name="USA: Boston"
/lat_lon="42.36 N 71.06 W"
/collection_date="01-Apr-2015"
Protein 1..391
/product="phosphoribosylaminoimidazolecarboxamide
formyltransferase"
/EC_number="2.1.2.3"
Region 2..391
/region_name="PRK07106"
/note="phosphoribosylaminoimidazolecarboxamide
formyltransferase"
/db_xref="CDD:180841"
CDS 1..391
/locus_tag="GAG71_22355"
/coded_by="WCOR01000034.1:17832..19007"
/inference="COORDINATES: similar to AA
sequence:RefSeq:NP_809431.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
ORIGIN
1 manelelkyg cnpnqkpari fmkegelpie vlngrpgyin lldafnswql vkelkeatgl
61 paaasfkhvs pagaavavem sdtlkkiyfv ddvklsplat ayarargadr mssygdfial
121 sdtcdeetar iinrevsdgv iapdytpeal eilknkrkgt ynvikidpay rpapiehkdv
181 fgvtfeqgrn elkidesllk emptqnkeip aeakrdliis litlkytqsn svcyakdgqa
241 igigagqqsr ihctrlagnk adiwylrqhp kvmnlpwiek irradrdnti dvyisedhdd
301 vladgvwqqf ftekpevltr eekrawldtm tgvalgsdaf fpfgdniera hksgvsyiaq
361 pggsvrddhv igtcdkynma maftgirlfh h
//