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phosphoribosylaminoimidazolecarboxamide formyltransferase [Bacteroides thetaiotaomicron]

GenBank: KAB4877931.1

Identical Proteins FASTA Graphics 

LOCUS       KAB4877931               391 aa            linear   BCT 13-OCT-2019
DEFINITION  phosphoribosylaminoimidazolecarboxamide formyltransferase
            [Bacteroides thetaiotaomicron].
ACCESSION   KAB4877931
VERSION     KAB4877931.1
DBLINK      BioProject: PRJNA544527
            BioSample: SAMN11943910
DBSOURCE    accession WCOR01000034.1
KEYWORDS    .
SOURCE      Bacteroides thetaiotaomicron
  ORGANISM  Bacteroides thetaiotaomicron
            Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales;
            Bacteroidaceae; Bacteroides.
REFERENCE   1  (residues 1 to 391)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S.M., Avila-Pacheco,J., Jiang,X.,
            Kearney,S.M., Perrotta,A.R., Berdy,B., Zhao,S., Lieberman,T.D.,
            Swanson,P.K., Smith,M., Roesemann,S., Alexander,J.E., Rich,S.A.,
            Livny,J., Vlamakis,H., Clish,C., Bullock,K., Deik,A., Scott,J.,
            Pierce,K.A., Xavier,R.J. and Alm,E.J.
  TITLE     A library of human gut bacterial isolates paired with longitudinal
            multiomics data enables mechanistic microbiome research
  JOURNAL   Nat. Med. 25 (9), 1442-1452 (2019)
   PUBMED   31477907
REFERENCE   2  (residues 1 to 391)
  AUTHORS   Poyet,M., Groussin,M., Gibbons,S., Xavier,R. and Alm,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-OCT-2019) Biological Engineering, Massachusetts
            Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA
            02139, USA
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.9.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 152.628x
            Sequencing Technology  :: Illumina NextSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 10/09/2019 01:37:01
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.9
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 5,243
            CDSs (total)                      :: 5,175
            Genes (coding)                    :: 5,047
            CDSs (with protein)               :: 5,047
            Genes (RNA)                       :: 68
            rRNAs                             :: 3, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1, 1 (5S, 16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 61
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 128
            CDSs (without protein)            :: 128
            Pseudo Genes (ambiguous residues) :: 0 of 128
            Pseudo Genes (frameshifted)       :: 36 of 128
            Pseudo Genes (incomplete)         :: 78 of 128
            Pseudo Genes (internal stop)      :: 37 of 128
            Pseudo Genes (multiple problems)  :: 20 of 128
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Bacteroides thetaiotaomicron"
                     /strain="BIOML-A76"
                     /isolation_source="fecal material [ENVO:00002003]"
                     /host="Homo sapiens"
                     /db_xref="taxon:818"
                     /geo_loc_name="USA: Boston"
                     /lat_lon="42.36 N 71.06 W"
                     /collection_date="01-Apr-2015"
     Protein         1..391
                     /product="phosphoribosylaminoimidazolecarboxamide
                     formyltransferase"
                     /EC_number="2.1.2.3"
     Region          2..391
                     /region_name="PRK07106"
                     /note="phosphoribosylaminoimidazolecarboxamide
                     formyltransferase"
                     /db_xref="CDD:180841"
     CDS             1..391
                     /locus_tag="GAG71_22355"
                     /coded_by="WCOR01000034.1:17832..19007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_809431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 manelelkyg cnpnqkpari fmkegelpie vlngrpgyin lldafnswql vkelkeatgl
       61 paaasfkhvs pagaavavem sdtlkkiyfv ddvklsplat ayarargadr mssygdfial
      121 sdtcdeetar iinrevsdgv iapdytpeal eilknkrkgt ynvikidpay rpapiehkdv
      181 fgvtfeqgrn elkidesllk emptqnkeip aeakrdliis litlkytqsn svcyakdgqa
      241 igigagqqsr ihctrlagnk adiwylrqhp kvmnlpwiek irradrdnti dvyisedhdd
      301 vladgvwqqf ftekpevltr eekrawldtm tgvalgsdaf fpfgdniera hksgvsyiaq
      361 pggsvrddhv igtcdkynma maftgirlfh h
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for phosphoribosylaminoimidazolecarboxamide formyltransferase (WP_008765038.1).

More about the gene FE838_RS16015

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