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MAG TPA: ABC transporter ATP-binding protein [Bifidobacterium longum]

GenBank: HCQ26614.1

Identical Proteins FASTA Graphics 

LOCUS       HCQ26614                 467 aa            linear   ENV 10-SEP-2018
DEFINITION  MAG TPA_asm: ABC transporter ATP-binding protein [Bifidobacterium
            longum].
ACCESSION   HCQ26614
VERSION     HCQ26614.1
DBLINK      BioProject: PRJNA417962
            BioSample: SAMN08020367
            Sequence Read Archive: SRR6485845
DBSOURCE    accession DQDK01000183.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA.
SOURCE      Bifidobacterium longum (human gut metagenome)
  ORGANISM  Bifidobacterium longum
            Bacteria; Bacillati; Actinomycetota; Actinomycetes;
            Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.
REFERENCE   1  (residues 1 to 467)
  AUTHORS   Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A.,
            Chaumeil,P.A. and Hugenholtz,P.
  TITLE     A standardized bacterial taxonomy based on genome phylogeny
            substantially revises the tree of life
  JOURNAL   Nat. Biotechnol. (2018) In press
   PUBMED   30148503
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (residues 1 to 467)
  AUTHORS   Parks,D.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2018) School of Chemistry and Molecular
            Biosciences, University of Queensland, Chemistry Bld, Cooper Road,
            St Lucia, Brisbane, Queensland 4072, Australia
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: CLC de novo assembler v. 4.4.1
            Expected Final Version :: yes
            Genome Coverage        :: 11.99x
            Sequencing Technology  :: Illumina HiSeq 2000
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/10/2018 21:30:45
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,053
            CDS (total)                       :: 2,002
            Genes (coding)                    :: 1,920
            CDS (coding)                      :: 1,920
            Genes (RNA)                       :: 51
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 46
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 82
            Pseudo Genes (ambiguous residues) :: 3 of 82
            Pseudo Genes (frameshifted)       :: 35 of 82
            Pseudo Genes (incomplete)         :: 46 of 82
            Pseudo Genes (internal stop)      :: 6 of 82
            Pseudo Genes (multiple problems)  :: 8 of 82
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Bifidobacterium longum"
                     /isolate="UBA9129"
                     /isolation_source="human gut"
                     /db_xref="taxon:216816"
                     /environmental_sample
                     /metagenome_source="human gut metagenome"
                     /note="metagenomic"
     Protein         1..467
                     /product="ABC transporter ATP-binding protein"
     CDS             1..467
                     /locus_tag="DIT82_08510"
                     /coded_by="complement(DQDK01000183.1:2851..4254)"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_696242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mravdftirp gervlllgas gagkstmmag lagvlggdee geqegsltid gvdareargr
       61 vglvlqdpds qiilerlgdd aafgcenlnv preeiwqrvr esldmvglgg leldrstrhl
      121 sggqrqrlal agvlamkpgl llldeptanl dpegvvevhd avkkvieatg qtmvvvehhi
      181 dvwldlvdrv ivlgrpdass ptgaviadgk pdevfaemgd vlaaggawvp graipdyspk
      241 qesahdapvl stenlsfgrg aalgvginld fypgevtalm gpngagkstl altlagllkp
      301 iagkvliadn lkpahagrep idwkskellg rigmvfqepe hqfaanfvrd evsigpksmg
      361 qsqdeayqta drmleqmnlt rfakanpytl sggekrrlsv asmlaaapkv lvmdeptfgq
      421 dfstwnemvk liaairdqgs cvimvthdea lvdalgarrv mfeeaka
//
Feature
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