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GenBank: HCQ26614.1
Identical Proteins FASTA Graphics
LOCUS HCQ26614 467 aa linear ENV 10-SEP-2018 DEFINITION MAG TPA_asm: ABC transporter ATP-binding protein [Bifidobacterium longum]. ACCESSION HCQ26614 VERSION HCQ26614.1 DBLINK BioProject: PRJNA417962 BioSample: SAMN08020367 Sequence Read Archive: SRR6485845 DBSOURCE accession DQDK01000183.1 KEYWORDS ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA. SOURCE Bifidobacterium longum (human gut metagenome) ORGANISM Bifidobacterium longum Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium. REFERENCE 1 (residues 1 to 467) AUTHORS Parks,D.H., Chuvochina,M., Waite,D.W., Rinke,C., Skarshewski,A., Chaumeil,P.A. and Hugenholtz,P. TITLE A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life JOURNAL Nat. Biotechnol. (2018) In press PUBMED 30148503 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (residues 1 to 467) AUTHORS Parks,D.H. TITLE Direct Submission JOURNAL Submitted (04-APR-2018) School of Chemistry and Molecular Biosciences, University of Queensland, Chemistry Bld, Cooper Road, St Lucia, Brisbane, Queensland 4072, Australia COMMENT Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Method :: CLC de novo assembler v. 4.4.1 Expected Final Version :: yes Genome Coverage :: 11.99x Sequencing Technology :: Illumina HiSeq 2000 ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 05/10/2018 21:30:45 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline Annotation Method :: Best-placed reference protein set; GeneMarkS+ Annotation Software revision :: 4.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 2,053 CDS (total) :: 2,002 Genes (coding) :: 1,920 CDS (coding) :: 1,920 Genes (RNA) :: 51 rRNAs :: 1, 1 (5S, 23S) complete rRNAs :: 1 (5S) partial rRNAs :: 1 (23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 82 Pseudo Genes (ambiguous residues) :: 3 of 82 Pseudo Genes (frameshifted) :: 35 of 82 Pseudo Genes (incomplete) :: 46 of 82 Pseudo Genes (internal stop) :: 6 of 82 Pseudo Genes (multiple problems) :: 8 of 82 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..467 /organism="Bifidobacterium longum" /isolate="UBA9129" /isolation_source="human gut" /db_xref="taxon:216816" /environmental_sample /metagenome_source="human gut metagenome" /note="metagenomic" Protein 1..467 /product="ABC transporter ATP-binding protein" CDS 1..467 /locus_tag="DIT82_08510" /coded_by="complement(DQDK01000183.1:2851..4254)" /inference="COORDINATES: similar to AA sequence:RefSeq:NP_696242.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 ORIGIN 1 mravdftirp gervlllgas gagkstmmag lagvlggdee geqegsltid gvdareargr 61 vglvlqdpds qiilerlgdd aafgcenlnv preeiwqrvr esldmvglgg leldrstrhl 121 sggqrqrlal agvlamkpgl llldeptanl dpegvvevhd avkkvieatg qtmvvvehhi 181 dvwldlvdrv ivlgrpdass ptgaviadgk pdevfaemgd vlaaggawvp graipdyspk 241 qesahdapvl stenlsfgrg aalgvginld fypgevtalm gpngagkstl altlagllkp 301 iagkvliadn lkpahagrep idwkskellg rigmvfqepe hqfaanfvrd evsigpksmg 361 qsqdeayqta drmleqmnlt rfakanpytl sggekrrlsv asmlaaapkv lvmdeptfgq 421 dfstwnemvk liaairdqgs cvimvthdea lvdalgarrv mfeeaka //
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Conserved Domains
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