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auxin-independent growth promoter-like protein [Arabidopsis thaliana]

GenBank: BAB08804.1

Identical Proteins FASTA Graphics 

LOCUS       BAB08804                 559 aa            linear   PLN 14-FEB-2004
DEFINITION  auxin-independent growth promoter-like protein [Arabidopsis
            thaliana].
ACCESSION   BAB08804
VERSION     BAB08804.1
DBSOURCE    accession AB007649.1
KEYWORDS    .
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1
  AUTHORS   Nakamura,Y., Sato,S., Kaneko,T., Kotani,H., Asamizu,E., Miyajima,N.
            and Tabata,S.
  TITLE     Structural analysis of Arabidopsis thaliana chromosome 5. III.
            Sequence features of the regions of 1,191,918 bp covered by
            seventeen physically assigned P1 clones
  JOURNAL   DNA Res. 4 (6), 401-414 (1997)
   PUBMED   9501997
REFERENCE   2  (residues 1 to 559)
  AUTHORS   Nakamura,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-OCT-1997) Yasukazu Nakamura, Kazusa DNA Research
            Institute, Department of Plant Gene Research; 1532-3, Yana,
            Kisarazu, Chiba 292-0812, Japan (E-mail:ynakamu@kazusa.or.jp,
            Tel:81-438-52-3935, Fax:81-438-52-3934)
COMMENT     Address for correspondence: kaos@kazusa.or.jp
            For the latest information on annotation of this clone, please see
            http://www.kazusa.or.jp/kaos/cgi-bin/agd_graph.cgi?c=MLE2
            Genes with similarity to proteins in the databases are described in
            'product' or 'note' qualifiers.  Genes that have no significant
            protein similarity are described as 'unknown protein'.
            The software programs used to predict genes include: Grail
            (Informatics Group, Oak Ridge National Laboratory,
            http://compbio.ornl.gov/Grail-1.3/),
            GENSCAN (Chris Burge, MIT, http://CCR-081.mit.edu/GENSCAN.html),
            NetGene2 (S.M. Hebsgaard, et al., CBS, Technical University of
            Denmark, http://www.cbs.dtu.dk/services/NetGene2/) and
            SplicePredictor (Volker Brendel, Stanford University,
            http://gremlin1.zool.iastate.edu/cgi-bin/sp.cgi).
            Genes encoding tRNAs are predicted by tRNAscan-SE
            (Sean Eddy, Washington University School of Medicine, St. Louis,
            http://genome.wustl.edu/eddy/tRNAscan-SE/).
            This sequence may not be the entire insert of this clone. It may be
            shorter because we remove overlaps between neighboring submissions.
            The 5' clone is K9H21 and the 3' clone is MBK5.
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /clone="MLE2"
                     /clone_lib="Mitsui P1"
                     /ecotype="Columbia"
     Protein         1..559
                     /product="auxin-independent growth promoter-like protein"
     Region          167..489
                     /region_name="O-FucT_plant"
                     /note="GDP-fucose protein O-fucosyltransferase, plant
                     specific subfamily; cd11299"
                     /db_xref="CDD:211385"
     Site            order(175..178,331,333,409..411,453,472..474)
                     /site_type="other"
                     /note="GDP-Fucose binding site [chemical binding]"
                     /db_xref="CDD:211385"
     CDS             1..559
                     /coded_by="complement(join(AB007649.1:2166..2408,
                     AB007649.1:2476..2734,AB007649.1:2838..3121,
                     AB007649.1:3189..3278,AB007649.1:3360..3528,
                     AB007649.1:3611..4245))"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="gene_id:MLE2.2"
ORIGIN      
        1 maksmrtikn pfftshppsp ffhlsllfft plkksspryl nhhhqtrcpp pqfflllisl
       61 slvfsgisfl tfsldtgsst cvstssassl kffisdvdhr qiltslavsg astlfplpar
      121 gghsgnmtee ekefwkqpng egykpcldfs leykkksasv skekkrflvv vvsgglnqqr
      181 nqivdavvia mileaalvvp vlqvnrvwgd esefsdlfdv ehfkktlrsd vrivsslpst
      241 hlmsrqtien qipwdvspvw irakyfkqln eegllvlkgl dsklaknlpp dlqklrckva
      301 fhalrfaapi enlgnkltrr mwiegpyial hlrlekdvwv rtgcltglgs efdriiaetr
      361 tsqpryltgr lnltyterrl agfcplnvye iarllkalga psnasiyiag gepfggsral
      421 eplakefsnl vtketlahkg ellpytnrss alaaidyivs lssdvfipsh ggnmakamqg
      481 nrayvghrkf impnkramlp lmenssvsda elsfltrklh rksqgypesr rgrrdrdvia
      541 ypvpecmcrh rkhrsvgff
//
1..559
/coded_by="complement(join(AB007649.1:2166..2408,
AB007649.1:2476..2734,AB007649.1:2838..3121,
AB007649.1:3189..3278,AB007649.1:3360..3528,
AB007649.1:3611..4245))"
/inference="non-experimental evidence, no additional
details recorded"
/note="gene_id:MLE2.2"
Feature BAB08804 : 1 segment
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for O-fucosyltransferase family protein (NP_201144.1).

More about the AT5G63390 gene

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