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GenBank: AAX33563.1
Identical Proteins FASTA Graphics
LOCUS AAX33563 931 aa linear INV 10-MAR-2005 DEFINITION LD04472p [Drosophila melanogaster]. ACCESSION AAX33563 VERSION AAX33563.1 DBSOURCE accession BT021415.1 KEYWORDS . SOURCE Drosophila melanogaster (fruit fly) ORGANISM Drosophila melanogaster Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. REFERENCE 1 (residues 1 to 931) AUTHORS Stapleton,M., Carlson,J., Chavez,C., Frise,E., George,R., Pacleb,J., Park,S., Wan,K., Yu,C., Rubin,G.M. and Celniker,S. TITLE Direct Submission JOURNAL Submitted (10-MAR-2005) Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA 94720, USA COMMENT Sequence submitted by: Berkeley Drosophila Genome Project Lawrence Berkeley National Laboratory Berkeley, CA 94720 This clone was sequenced as part of a high-throughput process to sequence clones from Drosophila Gene Collection (Rubin et al., Science 2000, Stapleton et al., Genome Biology 2002). The sequence has been subjected to integrity checks for sequence accuracy, presence of a polyA tail and contiguity within 100 kb in the genome. Thus we believe the sequence to reflect accurately this particular cDNA clone. However, there are artifacts associated with the generation of cDNA clones that may have not been detected in our initial analyses such as internal priming, priming from contaminating genomic DNA, retained introns due to reverse transcription of unspliced precursor RNAs, and reverse transcriptase errors that result in single base changes. For further information about this sequence, including its location and relationship to other sequences, please visit our Web site (http://fruitfly.berkeley.edu) or send email to cdna@fruitfly.org. Method: conceptual translation. FEATURES Location/Qualifiers source 1..931 /organism="Drosophila melanogaster" /strain="y; cn bw sp" /db_xref="taxon:7227" Protein 1..931 /product="LD04472p" Region 22..173 /region_name="PRP1_N" /note="PRP1 splicing factor, N-terminal; pfam06424" /db_xref="CDD:461908" Region 236..>800 /region_name="PEP_TPR_lipo" /note="putative PEP-CTERM system TPR-repeat lipoprotein; TIGR02917" /db_xref="CDD:274350" Region 393..419 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 424..448 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 454..481 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 610..861 /region_name="LapB" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; COG2956" /db_xref="CDD:442196" Region 633..660 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Site order(673..674,676,700,703..704,707..708,710..711,734, 737..738,741..742,745) /site_type="other" /note="putative protein binding surface [polypeptide binding]" /db_xref="CDD:276809" Region 698..728 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 733..758 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 767..795 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" CDS 1..931 /coded_by="BT021415.1:83..2878" /note="Longest ORF" ORIGIN 1 msnitaavia nrnkkhflgv paplgyvagv grgatgfttr sdigpardan dvsddrhapp 61 atkrkkkdee eeededlnds nydefsgysg slfskdpydk ddeeadaiyd sidkrmdekr 121 keyrdrrlre dleryrqerp kiqqqfsdlk rslasvtsee wstipevgds rnrkqrnpra 181 ekftplpdsl isrnlggess stldpssgla smvpgvatpg mltptgdldl rkigqarntl 241 mnvklsqvsd svtgqtvvdp kgyltdlqsm iptyggdind ikkarlllks vretnpnhpp 301 awiasarlee vtgkvqmarn limrgcemni qsedlwleaa rlqppdtaka viaqaarhip 361 tsvriwikaa dlesetkakr rvfrkalehi pnsvrlwkaa velenpddar illsravecc 421 ntsvelwlal arletyenar kvlnkareni ptdrqiwtta akleeangni hmvekiidrs 481 ltsltvngve inrdqwfqea ieaeksgavn ccqsivkavi gigveeedrk qtwiddaefc 541 akenafecar avyahalqif pskksiwlra ayfeknhgtr esleallqra vahcpkseil 601 wlmgakskwm agdvpaargi lslafqanpn sediwlaavk lesenseyer arrllakarg 661 saptprvmmk sarlewalek fdealrllee avevfpdfpk lwmmkgqiee qqrrtddaaa 721 tytlglkkcp tsiplwilsa nleerkgvlt karsilergr lrnpkvavlw leairvelra 781 glkeiastmm aralqecpna gelwaeaifm etkpqrktks vdalkkcehd phvllavskl 841 fwsehkfskc rdwfnrtvki dpdlgdaway fykfellhgt eaqqqevldr cisaepthge 901 swcrvskniq nwqfktpevl ravvrelsip i //
Whole sequence Selected region from: to:
Conserved Domains
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