U.S. flag

An official website of the United States government

LD04472p [Drosophila melanogaster]

GenBank: AAX33563.1

Identical Proteins FASTA Graphics 

LOCUS       AAX33563                 931 aa            linear   INV 10-MAR-2005
DEFINITION  LD04472p [Drosophila melanogaster].
ACCESSION   AAX33563
VERSION     AAX33563.1
DBSOURCE    accession BT021415.1
KEYWORDS    .
SOURCE      Drosophila melanogaster (fruit fly)
  ORGANISM  Drosophila melanogaster
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
REFERENCE   1  (residues 1 to 931)
  AUTHORS   Stapleton,M., Carlson,J., Chavez,C., Frise,E., George,R.,
            Pacleb,J., Park,S., Wan,K., Yu,C., Rubin,G.M. and Celniker,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2005) Berkeley Drosophila Genome Project,
            Lawrence Berkeley National Laboratory, One Cyclotron Road,
            Berkeley, CA 94720, USA
COMMENT     Sequence submitted by:
            Berkeley Drosophila Genome Project
             Lawrence Berkeley National Laboratory
            Berkeley, CA 94720
             This clone was sequenced as part of a high-throughput process to
            sequence clones from Drosophila Gene Collection (Rubin et al.,
            Science 2000, Stapleton et al., Genome Biology 2002). The sequence
            has been subjected to integrity checks for sequence accuracy,
            presence of a polyA tail and contiguity within 100 kb in the
            genome. Thus we believe the sequence to reflect accurately this
            particular cDNA clone. However, there are artifacts associated with
            the generation of cDNA clones that may have not been detected in
            our initial analyses such as internal priming, priming from
            contaminating genomic DNA, retained introns due to reverse
            transcription of unspliced precursor RNAs, and reverse
            transcriptase errors that result in single base changes. For
            further information about this sequence, including its location and
            relationship to other sequences, please visit our Web site
            (http://fruitfly.berkeley.edu) or send email to cdna@fruitfly.org.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Drosophila melanogaster"
                     /strain="y; cn bw sp"
                     /db_xref="taxon:7227"
     Protein         1..931
                     /product="LD04472p"
     Region          22..173
                     /region_name="PRP1_N"
                     /note="PRP1 splicing factor, N-terminal; pfam06424"
                     /db_xref="CDD:461908"
     Region          236..>800
                     /region_name="PEP_TPR_lipo"
                     /note="putative PEP-CTERM system TPR-repeat lipoprotein;
                     TIGR02917"
                     /db_xref="CDD:274350"
     Region          393..419
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          424..448
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          454..481
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          610..861
                     /region_name="LapB"
                     /note="Lipopolysaccharide biosynthesis regulator
                     YciM/LapB, contains six TPR domains and a C-terminal
                     metal-binding domain [Cell wall/membrane/envelope
                     biogenesis]; COG2956"
                     /db_xref="CDD:442196"
     Region          633..660
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Site            order(673..674,676,700,703..704,707..708,710..711,734,
                     737..738,741..742,745)
                     /site_type="other"
                     /note="putative protein binding surface [polypeptide
                     binding]"
                     /db_xref="CDD:276809"
     Region          698..728
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          733..758
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     Region          767..795
                     /region_name="TPR repeat"
                     /note="TPR repeat [structural motif]"
                     /db_xref="CDD:276809"
     CDS             1..931
                     /coded_by="BT021415.1:83..2878"
                     /note="Longest ORF"
ORIGIN      
        1 msnitaavia nrnkkhflgv paplgyvagv grgatgfttr sdigpardan dvsddrhapp
       61 atkrkkkdee eeededlnds nydefsgysg slfskdpydk ddeeadaiyd sidkrmdekr
      121 keyrdrrlre dleryrqerp kiqqqfsdlk rslasvtsee wstipevgds rnrkqrnpra
      181 ekftplpdsl isrnlggess stldpssgla smvpgvatpg mltptgdldl rkigqarntl
      241 mnvklsqvsd svtgqtvvdp kgyltdlqsm iptyggdind ikkarlllks vretnpnhpp
      301 awiasarlee vtgkvqmarn limrgcemni qsedlwleaa rlqppdtaka viaqaarhip
      361 tsvriwikaa dlesetkakr rvfrkalehi pnsvrlwkaa velenpddar illsravecc
      421 ntsvelwlal arletyenar kvlnkareni ptdrqiwtta akleeangni hmvekiidrs
      481 ltsltvngve inrdqwfqea ieaeksgavn ccqsivkavi gigveeedrk qtwiddaefc
      541 akenafecar avyahalqif pskksiwlra ayfeknhgtr esleallqra vahcpkseil
      601 wlmgakskwm agdvpaargi lslafqanpn sediwlaavk lesenseyer arrllakarg
      661 saptprvmmk sarlewalek fdealrllee avevfpdfpk lwmmkgqiee qqrrtddaaa
      721 tytlglkkcp tsiplwilsa nleerkgvlt karsilergr lrnpkvavlw leairvelra
      781 glkeiastmm aralqecpna gelwaeaifm etkpqrktks vdalkkcehd phvllavskl
      841 fwsehkfskc rdwfnrtvki dpdlgdaway fykfellhgt eaqqqevldr cisaepthge
      901 swcrvskniq nwqfktpevl ravvrelsip i
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.