LOCUS AAH79105 411 aa linear ROD 26-JUL-2016
DEFINITION Zfp426l protein, partial [Rattus norvegicus].
ACCESSION AAH79105
VERSION AAH79105.1
DBSOURCE accession BC079105.1
KEYWORDS .
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (residues 1 to 411)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (residues 1 to 411)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Howard Jacobs
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 183 Row: k Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..411
/organism="Rattus norvegicus"
/db_xref="taxon:10116"
/clone="IMAGE:7125187"
/tissue_type="Lung, rat (Brown Norway)"
/clone_lib="NIH_MGC_232"
/lab_host="DH10B"
/note="Vector: pExpress1"
Protein 1..>411
/product="Zfp426l protein"
Region 41..97
/region_name="KRAB"
/note="krueppel associated box; smart00349"
/db_xref="CDD:214630"
Region 265..281
/region_name="C2H2 Zn finger"
/note="C2H2 Zn finger [structural motif]"
/db_xref="CDD:275368"
Region 289..309
/region_name="C2H2 Zn finger"
/note="C2H2 Zn finger [structural motif]"
/db_xref="CDD:275368"
Region <317..366
/region_name="PHA00733"
/note="hypothetical protein"
/db_xref="CDD:177301"
Region 317..337
/region_name="C2H2 Zn finger"
/note="C2H2 Zn finger [structural motif]"
/db_xref="CDD:275368"
Site order(322,324,326,328..329,332..333,336,350,352,356..357,
360..361,364,378,380,382,384..385,388..389,392)
/site_type="other"
/note="putative nucleic acid binding site [nucleotide
binding]"
/db_xref="CDD:275368"
Region 344..365
/region_name="zf-C2H2"
/note="Zinc finger, C2H2 type; pfam00096"
/db_xref="CDD:395048"
Region 345..365
/region_name="C2H2 Zn finger"
/note="C2H2 Zn finger [structural motif]"
/db_xref="CDD:275368"
Region 371..393
/region_name="zf-C2H2"
/note="Zinc finger, C2H2 type; pfam00096"
/db_xref="CDD:395048"
Region 373..393
/region_name="C2H2 Zn finger"
/note="C2H2 Zn finger [structural motif]"
/db_xref="CDD:275368"
CDS 1..411
/gene="Zfp426l"
/gene_synonym="Zfp426"
/coded_by="BC079105.1:444..>1676"
/db_xref="GeneID:367034"
/db_xref="RGD:1308643"
ORIGIN
1 maaidlshgl lprepiyvye anievegtvt dnqancyqds vtfddvavef tpdewtlldl
61 tqknlyrevm lenyenltsv gcqffipslt pwlkqeelgv aesalpqqle lqptiddsel
121 enyfrmqsss atemvgdssl qeqsgnhseg dlrdskpcgn vlgeqlclnt evstqsqgys
181 secnwygkdi lsllketstg qnvselnqcg klfsltpnim ypststnekp fectdcetaf
241 fnqsyfqpdm rphnggepyd wskfgngfih ptslamhlpi lnarnpykfe ecgkdfqyfa
301 clnnpmgmct gekfcdckec wkaftvsshl tqyvsihtee kskvckicgk sfanysrlsa
361 hvkthneekp fvckecgkaf knmsylndhv rihtgiksyk ckkkkkkkkk k
//