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unknown protein; 100543-99568 [Arabidopsis thaliana]

GenBank: AAG51229.1

Identical Proteins FASTA Graphics 

LOCUS       AC035249_4               206 aa            linear   PLN 19-JAN-2001
DEFINITION  unknown protein; 100543-99568 [Arabidopsis thaliana].
ACCESSION   AAG51229
VERSION     AAG51229.1
DBSOURCE    accession AC035249.7
KEYWORDS    .
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (residues 1 to 206)
  AUTHORS   Lin,X., Kaul,S., Town,C.D., Benito,M.-I., Creasy,T.H., Haas,B.J.,
            Wu,D., Maiti,R., Ronning,C.M., Koo,H., Fujii,C.Y., Utterback,T.R.,
            Barnstead,M.E., Bowman,C.L., White,O., Nierman,W.C. and Fraser,C.M.
  TITLE     Arabidopsis thaliana chromosome 1 BAC F8D11 genomic sequence
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 206)
  AUTHORS   Lin,X. and Kaul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2000) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA, xlin@tigr.org
REFERENCE   3  (residues 1 to 206)
  AUTHORS   Town,C.D. and Kaul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2001) The Institute for Genomic Research, 9712
            Medical Center Dr, Rockville, MD 20850, USA, cdtown@tigr.org
COMMENT     Address all correspondence to:at@tigr.org
            
            BAC clone F8D11 is from Arabidopsis thaliana chromosome 1
            The orientation of the sequence is from SP6 to T7 end of the BAC
            clone.
            Genes were identified by a combination of several methods: Gene
            prediction programs including Genscan+ (Chris Burge,
            http://CCR-081.mit.edu/GENSCAN.html), GeneMarkHMM (Mark Borodovsky,
            http://genemark.biology.gatech.edu/GeneMark/), GlimmerA (a variant
            of GlimmerM, see Mihaela Pertea,
            http://www.tigr.org/softlab/glimmerm_htm/glimmerm.html, and
            GeneSplicer (Mihaela Pertea and Steven Salzberg, contact
            mpertea@tigr.org), searches of the complete sequence against a
            peptide database and the plant EST database at TIGR
            (http://www.tigr.org/tdb/tgi.shtml). Annotated genes are named to
            indicate the level of evidence for their annotation. Genes with
            similarity to other proteins are named after the database hits.
            Genes without significant peptide similarity but with EST
            similarity are named as  unknown  proteins. Genes without protein
            or EST similarity, that are predicted by more than two gene
            prediction programs over most of their length are annotated as
            hypothetical  proteins. Genes encoding tRNAs are predicted by
            tRNAscan-SE (Sean Eddy, http://genome.wustl.edu/eddy/tRNAscan-SE/).
            Simple repeats are identified by repeatmasker (Arian Smit,
            http://ftp.genome.washington.edu/RM/RepeatMasker.html).
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Arabidopsis thaliana"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /clone="F8D11"
                     /ecotype="Columbia"
     Protein         1..206
                     /product="unknown protein; 100543-99568"
     Region          22..187
                     /region_name="DUF4371"
                     /note="Domain of unknown function (DUF4371); cl46273"
                     /db_xref="CDD:480613"
     Region          <180..>206
                     /region_name="PLN02475"
                     /note="5-methyltetrahydropteroyltriglutamate--homocysteine
                     methyltransferase"
                     /db_xref="CDD:215264"
     CDS             1..206
                     /gene="F8D11.16"
                     /coded_by="complement(join(AC035249.7:99568..99638,
                     AC035249.7:99710..99901,AC035249.7:100067..100372,
                     AC035249.7:100492..100543))"
ORIGIN      
        1 mmsnalrrfd pawfekydgi ikherlgthv gkpnsshnya iekcvnlmnq gqsivhalfk
       61 qddvmkreyh iplntsidas ryllrqgiaf hghdeseesa nkgnflelvk ytgeqndate
      121 qmavvfrfvd ksgtvkerfi evvhvketss asvksaiddl fakyglslkt vrgqgydgas
      181 imkvakgvak sfdllslllk iivvyk
//
Feature
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Reference sequence information

  • RefSeq protein
    See the reference protein sequence for General transcription factor 2-related zinc finger protein (NP_174994.1).

More about the AT1G42710 gene

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