LOCUS AC035249_4 206 aa linear PLN 19-JAN-2001
DEFINITION unknown protein; 100543-99568 [Arabidopsis thaliana].
ACCESSION AAG51229
VERSION AAG51229.1
DBSOURCE accession AC035249.7
KEYWORDS .
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (residues 1 to 206)
AUTHORS Lin,X., Kaul,S., Town,C.D., Benito,M.-I., Creasy,T.H., Haas,B.J.,
Wu,D., Maiti,R., Ronning,C.M., Koo,H., Fujii,C.Y., Utterback,T.R.,
Barnstead,M.E., Bowman,C.L., White,O., Nierman,W.C. and Fraser,C.M.
TITLE Arabidopsis thaliana chromosome 1 BAC F8D11 genomic sequence
JOURNAL Unpublished
REFERENCE 2 (residues 1 to 206)
AUTHORS Lin,X. and Kaul,S.
TITLE Direct Submission
JOURNAL Submitted (06-APR-2000) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA, xlin@tigr.org
REFERENCE 3 (residues 1 to 206)
AUTHORS Town,C.D. and Kaul,S.
TITLE Direct Submission
JOURNAL Submitted (19-JAN-2001) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA, cdtown@tigr.org
COMMENT Address all correspondence to:at@tigr.org
BAC clone F8D11 is from Arabidopsis thaliana chromosome 1
The orientation of the sequence is from SP6 to T7 end of the BAC
clone.
Genes were identified by a combination of several methods: Gene
prediction programs including Genscan+ (Chris Burge,
http://CCR-081.mit.edu/GENSCAN.html), GeneMarkHMM (Mark Borodovsky,
http://genemark.biology.gatech.edu/GeneMark/), GlimmerA (a variant
of GlimmerM, see Mihaela Pertea,
http://www.tigr.org/softlab/glimmerm_htm/glimmerm.html, and
GeneSplicer (Mihaela Pertea and Steven Salzberg, contact
mpertea@tigr.org), searches of the complete sequence against a
peptide database and the plant EST database at TIGR
(http://www.tigr.org/tdb/tgi.shtml). Annotated genes are named to
indicate the level of evidence for their annotation. Genes with
similarity to other proteins are named after the database hits.
Genes without significant peptide similarity but with EST
similarity are named as unknown proteins. Genes without protein
or EST similarity, that are predicted by more than two gene
prediction programs over most of their length are annotated as
hypothetical proteins. Genes encoding tRNAs are predicted by
tRNAscan-SE (Sean Eddy, http://genome.wustl.edu/eddy/tRNAscan-SE/).
Simple repeats are identified by repeatmasker (Arian Smit,
http://ftp.genome.washington.edu/RM/RepeatMasker.html).
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..206
/organism="Arabidopsis thaliana"
/db_xref="taxon:3702"
/chromosome="1"
/clone="F8D11"
/ecotype="Columbia"
Protein 1..206
/product="unknown protein; 100543-99568"
Region 22..187
/region_name="DUF4371"
/note="Domain of unknown function (DUF4371); cl46273"
/db_xref="CDD:480613"
Region <180..>206
/region_name="PLN02475"
/note="5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase"
/db_xref="CDD:215264"
CDS 1..206
/gene="F8D11.16"
/coded_by="complement(join(AC035249.7:99568..99638,
AC035249.7:99710..99901,AC035249.7:100067..100372,
AC035249.7:100492..100543))"
ORIGIN
1 mmsnalrrfd pawfekydgi ikherlgthv gkpnsshnya iekcvnlmnq gqsivhalfk
61 qddvmkreyh iplntsidas ryllrqgiaf hghdeseesa nkgnflelvk ytgeqndate
121 qmavvfrfvd ksgtvkerfi evvhvketss asvksaiddl fakyglslkt vrgqgydgas
181 imkvakgvak sfdllslllk iivvyk
//